Parental gene: | Mrpl47, ENSRNOG00000011639 |
| Aliases: | None |
| Description: | 39S ribosomal protein L47, mitochondrial [Source:RefSeq peptide;Acc:NP_001032260] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 2:138779650..138790789(-) |
>ENSRNOG00000011639
ATGGCTGCCACCAGTCTAGTGGGTATTTGTAGAAGAGCCTCAGCGTTCTTAAAGGCTGCTTGTTCCCTAGTAAATCCCAA
GACCCCTGCTCACTCCGGTTGCAGGCCTCCTCTTAGTTTGTTGCATAAGAACACACCACATGCCACATCTTTTCTCCAGT
GTAAATTTCTTCATACCACGTTGTCAAGGAAAGGACTAGAAGAATTTTTTGATGACCCAAAGAATTGGGGGGAAGAAAAA
GTCAAATCTGGAGCTTCATGGACCTGCCAGCAGCTGAGGAACAAAAGTAACGAAGACTTACATAAGCTTTGGTATGTCCT
TCTGAAGGAAAGGAACATGCTTCTAACTCTAGAGCAAGAGGCCAAGCGACAGAGACTGCCGATGCCAAGTCCAGAGCGCT
TAGAAAAGGTTGTGGATTCCATGGATGCCTTAGATAAAGTTGTCCAGGAGAGGGAAGATGCTTTAAGGCTGCTTCAGACC
GGTCAAGAAAAGCCAAGACCCGGTGCTTGGAGACAGGACATCTTTGGAAGAATCGTCTGGCACAAATTCAAGCAGTGGCC
TATACCTTGGTACCTAAATAAGAGATACAACCGGAGGCGGTTCTTCGCAATGCCTTACGTGGATAGCTTTATCAGACTGA
GAATTGAGAAACATGCCCGCACTGAAGCAAGAAAGAGAAGCTTACAGAAAAAGAAAGAAAAAATTCTCCAGGCAAAGTTC
CCACATCTCTCTCAAGACCGGAAATCAAGTACTGTCTAA
ATGGCTGCCACCAGTCTAGTGGGTATTTGTAGAAGAGCCTCAGCGTTCTTAAAGGCTGCTTGTTCCCTAGTAAATCCCAA
GACCCCTGCTCACTCCGGTTGCAGGCCTCCTCTTAGTTTGTTGCATAAGAACACACCACATGCCACATCTTTTCTCCAGT
GTAAATTTCTTCATACCACGTTGTCAAGGAAAGGACTAGAAGAATTTTTTGATGACCCAAAGAATTGGGGGGAAGAAAAA
GTCAAATCTGGAGCTTCATGGACCTGCCAGCAGCTGAGGAACAAAAGTAACGAAGACTTACATAAGCTTTGGTATGTCCT
TCTGAAGGAAAGGAACATGCTTCTAACTCTAGAGCAAGAGGCCAAGCGACAGAGACTGCCGATGCCAAGTCCAGAGCGCT
TAGAAAAGGTTGTGGATTCCATGGATGCCTTAGATAAAGTTGTCCAGGAGAGGGAAGATGCTTTAAGGCTGCTTCAGACC
GGTCAAGAAAAGCCAAGACCCGGTGCTTGGAGACAGGACATCTTTGGAAGAATCGTCTGGCACAAATTCAAGCAGTGGCC
TATACCTTGGTACCTAAATAAGAGATACAACCGGAGGCGGTTCTTCGCAATGCCTTACGTGGATAGCTTTATCAGACTGA
GAATTGAGAAACATGCCCGCACTGAAGCAAGAAAGAGAAGCTTACAGAAAAAGAAAGAAAAAATTCTCCAGGCAAAGTTC
CCACATCTCTCTCAAGACCGGAAATCAAGTACTGTCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 4 .77 RPM |
| SRP017611_kidney | 16 .05 RPM |
| SRP017611_brain | 10 .14 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000011380 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000002312 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000031548 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000012649 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000021301 | ortholog_one2one | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000017214 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000037531 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000016957 | ortholog_one2one | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000004284 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000006898 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000008909 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_1829 | 70.22 | 88.49 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_2523 | 81.25 | 50.79 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000011639 retrocopies