RetrogeneDB ID:

retro_ogar_3015

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873696.1:3186866..3187255(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MRPL47
Ensembl ID:ENSOGAG00000016957
Aliases:None
Description:mitochondrial ribosomal protein L47 [Source:HGNC Symbol;Acc:16652]


Retrocopy-Parental alignment summary:






>retro_ogar_3015
AAAATCTGGAGCAGTCCTACTGAAAGAAAAAAACATGTTCTTCACCATAGAGCAGGAGGCCAGATGGTGGAGATTGCCAA
TACTGAATCCAGAGCAGATGGAGAAGGCAGCAGATTCCACAGATGCAGTCGACAAAGTTGTCCAGAAAGAGATGCTCTCA
GGCTTCTTCAGACTGGTGAAAAGAAGGCTAGACCTGGTGCTTGGAGAAGAGACGTCTTTGGGAGAGTCACGCAGCACGAG
TTCAATCAGGGGCCAAACCTTGGAACCTAAATAAAAAAGACAGAAAGAAATGATTCCTCGTCATGCCTTATGTGGAACGT
TTTGTCGAACTGAAACTTGACAAGGAAGCCAAGAGGAAGGAAGCAAGCCCTTCAGAGCAAGGAAGAAAA

ORF - retro_ogar_3015 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 56.72 %
Parental protein coverage: 52.4 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalKLWY-ILLKERNMLLTLEQEAKRQRLPMPSPERLEKVIDSMDALDKVVQ-EREDALRLLQTGQEYPRPGA
K.W...LLKE.NM..T.EQEA...RLP...PE..EK..DS.DA.DKVVQ.ER.DALRLLQTG....RPGA
RetrocopyKIWS>VLLKEKNMFFTIEQEARWWRLPILNPEQMEKAADSTDAVDKVVQ<ER-DALRLLQTGEKKARPGA
ParentalWRRNIFGRIIWHKFKQWP-IPWYLNKRYRKKRFFAMPYVEHFVRLRFEKEARIRTRKKSLEKKK
WRR..FGR...H.F.Q.P..PW.LNK..RKK.F..MPYVE.FV.L...KEA.......S....K
RetrocopyWRRDVFGRVTQHEFNQGP<KPWNLNKKDRKK*FLVMPYVERFVELKLDKEAKRKEASPSEQGRK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.