Parental gene: | Zc3h15, ENSRNOG00000005256 |
| Aliases: | None |
| Description: | Zinc finger CCCH domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q6U6G5] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 3:77550918..77570542(+) |
>ENSRNOG00000005256
ATGCCCCCCAAGAAACAGGCTCAGGCCGGGGGCAGCAAGAAGGCGGAGCAGAAGAAGAAGGAGAAGATCATCGAGGACAA
AACTTTTGGACTAAAGAATAAGAAGGGAGCAAAACAACAGAAATTTATTAAGGCTGTCACTCATCAAGTGAAATTTGGAC
AACAGAATCCTCGTCAGGTAGCACAAAGTGAAGCTGAAAAGAAATTGAAGAAAGATGACAAGAAGAAAGAGCTACAAGAA
CTAAATGAGTTGTTCAAACCGGTAGTTGCTGCACAAAAAATAAGTAAAGGTGCGGACCCCAAATCTGTGGTGTGCGCATT
CTTCAAACAGGGACAGTGTACTAAAGGAGATAAATGTAAGTTCTCTCATGACCTCACTTTGGAGAGAAAATGTGAAAAAC
GAAGTGTTTACATTGATGCAAGAGATGAAGAACTTGAAAAAGATACCATGGATAACTGGGATGAGAAAAAGCTGGAAGAA
GTAGTAAACAAGAAGCACGGTGAGGCGGAAAAGAAAAAACCAAAAACTCAAATAGTGTGCAGACATTTTCTTGAAGCTAT
TGAAAATAACAAGTATGGCTGGTTTTGGGTGTGTCCTGGAGGTGGGGACAATTGCATGTATCGCCATGCACTTCCTCCTG
GGTTTGTGCTAAAGAAAGACAAAAAGAAAGAAGAAAAAGAAGATGAAATATCATTAGAAGATCTAATTGAAAGAGAGCGT
TCTGCCCTAGGTCCAAATGTTACCAAAATCACTCTAGAATCTTTTCTTGCATGGAAGAAAAGGAAAAGACAAGAAAAGAT
TGATAAACTTGAACAAGATATGGAGAGGCGGAAAGCTGACTTCAAAGCAGGGAAAGCGCTGGTGATCAGTGGTCGTGAGG
TGTTTGAGTTTCGTCCAGAGCTGGTCAACGATGACGACGAGGAAGCAGACGACACCCGTTACATTCAGGGAACAGGAGGT
GATGAGGTTGATGACTCTGTGGGTGTAAATGACATAGATCTAAGCCTCTATGTCCCAAGAGATGTGGAAGAGACAGGGAT
CACTGTGGCCAGTCTTGAAAGATTCAGCACCTATGCGTCAGATAAGGACGAGAACAAATTAAGTGAAGCTTCTGGAGGTC
TGGCTGAAAATGGTGAAAGAAGTGATTTGGATGAGGACAGCGGAGGGGGAGGACAGGAAAATGGGTCCATCGATGCTGTT
CCTGTTGATGAAAACCTGTTCACTGGTGAAGATCTGGATGAACTAGAAGAAGAATTAAACACACTTGATTTAGAAGAATG
A
ATGCCCCCCAAGAAACAGGCTCAGGCCGGGGGCAGCAAGAAGGCGGAGCAGAAGAAGAAGGAGAAGATCATCGAGGACAA
AACTTTTGGACTAAAGAATAAGAAGGGAGCAAAACAACAGAAATTTATTAAGGCTGTCACTCATCAAGTGAAATTTGGAC
AACAGAATCCTCGTCAGGTAGCACAAAGTGAAGCTGAAAAGAAATTGAAGAAAGATGACAAGAAGAAAGAGCTACAAGAA
CTAAATGAGTTGTTCAAACCGGTAGTTGCTGCACAAAAAATAAGTAAAGGTGCGGACCCCAAATCTGTGGTGTGCGCATT
CTTCAAACAGGGACAGTGTACTAAAGGAGATAAATGTAAGTTCTCTCATGACCTCACTTTGGAGAGAAAATGTGAAAAAC
GAAGTGTTTACATTGATGCAAGAGATGAAGAACTTGAAAAAGATACCATGGATAACTGGGATGAGAAAAAGCTGGAAGAA
GTAGTAAACAAGAAGCACGGTGAGGCGGAAAAGAAAAAACCAAAAACTCAAATAGTGTGCAGACATTTTCTTGAAGCTAT
TGAAAATAACAAGTATGGCTGGTTTTGGGTGTGTCCTGGAGGTGGGGACAATTGCATGTATCGCCATGCACTTCCTCCTG
GGTTTGTGCTAAAGAAAGACAAAAAGAAAGAAGAAAAAGAAGATGAAATATCATTAGAAGATCTAATTGAAAGAGAGCGT
TCTGCCCTAGGTCCAAATGTTACCAAAATCACTCTAGAATCTTTTCTTGCATGGAAGAAAAGGAAAAGACAAGAAAAGAT
TGATAAACTTGAACAAGATATGGAGAGGCGGAAAGCTGACTTCAAAGCAGGGAAAGCGCTGGTGATCAGTGGTCGTGAGG
TGTTTGAGTTTCGTCCAGAGCTGGTCAACGATGACGACGAGGAAGCAGACGACACCCGTTACATTCAGGGAACAGGAGGT
GATGAGGTTGATGACTCTGTGGGTGTAAATGACATAGATCTAAGCCTCTATGTCCCAAGAGATGTGGAAGAGACAGGGAT
CACTGTGGCCAGTCTTGAAAGATTCAGCACCTATGCGTCAGATAAGGACGAGAACAAATTAAGTGAAGCTTCTGGAGGTC
TGGCTGAAAATGGTGAAAGAAGTGATTTGGATGAGGACAGCGGAGGGGGAGGACAGGAAAATGGGTCCATCGATGCTGTT
CCTGTTGATGAAAACCTGTTCACTGGTGAAGATCTGGATGAACTAGAAGAAGAATTAAACACACTTGATTTAGAAGAATG
A
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 23 .94 RPM |
| SRP017611_kidney | 46 .75 RPM |
| SRP017611_brain | 47 .16 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000021762 | ortholog_one2many | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000011958 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000005931 | ortholog_one2many | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000012965 | ortholog_one2many | 2 retrogenes | |
| Dipodomys ordii | ENSDORG00000011664 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000001563 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000007741 | possible_ortholog | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000027565 | ortholog_many2many | 5 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000011903 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000002182 | ortholog_one2many | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000015790 | ortholog_many2many | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000012717 | ortholog_one2many | 1 retrogene | |
| Sorex araneus | ENSSARG00000012071 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_284 | 90.38 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_662 | 70.76 | 54.23 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_925 | 94.37 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_rnor_2628 | 78.87 | 98.12 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000005256 retrocopies