Parental gene: | ENSOPRG00000015790 |
| Aliases: | None |
| Description: | None |
| Organism: | Southern American pika (Ochotona princeps) |
| Coordinates: | scaffold_10247:3378..12298(+) |
>ENSOPRG00000015790
GTAGCACAAAGTGAAGCTGAGAAGAAATTGAAGAAAGATGACAAGAAGAAAGAATTGCAGGAATTAAATGAGCTCTTCAA
GCCTGTAGTTGCTGCTCAAAAAATTAGTAAAGGTGCGGATCCCAAGTCCGTGGTATGTGCATTCTTCAAGCAAGGACAGT
GTACTAAAGGAGATAAGTGTAAGTTCTCTCATGACTTGACTCTGGAGAGAAAATGTGAAAAGCGAAGTGTTTACATTGAT
GCAAGAGATGAAGAACTTGAAAAAGATACTATGGACAATTGGGATGAGAAAAAACTGGAAGAAGTAGTGAACAAGAAGCA
CGGTGAGGCGGAAAAGAAAAAGCCAAAAACTCAAATAGTGTGCAAACATTTCCTTGAAGCCATTGAAAACAACAAGTATG
GCTGGTTTTGGGTTTGCCCTGGAGGAGGTGATAATTGCATGTATCGGCATGCACTTCCTCCTGGATTTGTGTTGAAAAAA
GACAAAAAGAAAGAAGAGAAAGAAGATGAAATTTCATTAGAAGATCTAATTGAAAGAGAGCGTTCTGCCCTAGGCCCAAA
TGTTACCAAAATCACTCTAGAATCTTTTCTTGCATGGAAAAAAAGGAAAAGACAAGAAAAGATTGATAAACTCGAACAAG
ATATGGAAAGAAGAAAAGCAGATTTCAAAGCAGGCAAAGCACTAGTGATCAGTGGTCGTGAGGTGTTTGAATTTCGTCCT
GAGTTGGTCAATGATGATGATGAGGAAGCAGATGATACCCGTTACACCCAGGGAACAGGTGGAGATGAGGTTGACGATTC
AGTGAATGTAAATGACATAGATTTAAGTCTGTATGTCCCAAGAGATGTAGATGAGACAGGTATTACTGTAGCCAGTCTTG
AAAGATTCAGCACATATGCTTTGGATAAAGATGAAAACAAATTAAGCGAAGCTTCTGGAGGCAGGGCTGAAAATGGTGAA
AGAAGTGATCTGGAAGAAGACAATGAAGGGGAAGCTCAGGAAAATGGAGCTATTGATGCCGTTCCTGTTGATGAAAATCT
TTTTACTGGGGAAGATTTGGATGAACTAGAAGAAGAATTAAACACACTTGATTTAGAAGAATGA
GTAGCACAAAGTGAAGCTGAGAAGAAATTGAAGAAAGATGACAAGAAGAAAGAATTGCAGGAATTAAATGAGCTCTTCAA
GCCTGTAGTTGCTGCTCAAAAAATTAGTAAAGGTGCGGATCCCAAGTCCGTGGTATGTGCATTCTTCAAGCAAGGACAGT
GTACTAAAGGAGATAAGTGTAAGTTCTCTCATGACTTGACTCTGGAGAGAAAATGTGAAAAGCGAAGTGTTTACATTGAT
GCAAGAGATGAAGAACTTGAAAAAGATACTATGGACAATTGGGATGAGAAAAAACTGGAAGAAGTAGTGAACAAGAAGCA
CGGTGAGGCGGAAAAGAAAAAGCCAAAAACTCAAATAGTGTGCAAACATTTCCTTGAAGCCATTGAAAACAACAAGTATG
GCTGGTTTTGGGTTTGCCCTGGAGGAGGTGATAATTGCATGTATCGGCATGCACTTCCTCCTGGATTTGTGTTGAAAAAA
GACAAAAAGAAAGAAGAGAAAGAAGATGAAATTTCATTAGAAGATCTAATTGAAAGAGAGCGTTCTGCCCTAGGCCCAAA
TGTTACCAAAATCACTCTAGAATCTTTTCTTGCATGGAAAAAAAGGAAAAGACAAGAAAAGATTGATAAACTCGAACAAG
ATATGGAAAGAAGAAAAGCAGATTTCAAAGCAGGCAAAGCACTAGTGATCAGTGGTCGTGAGGTGTTTGAATTTCGTCCT
GAGTTGGTCAATGATGATGATGAGGAAGCAGATGATACCCGTTACACCCAGGGAACAGGTGGAGATGAGGTTGACGATTC
AGTGAATGTAAATGACATAGATTTAAGTCTGTATGTCCCAAGAGATGTAGATGAGACAGGTATTACTGTAGCCAGTCTTG
AAAGATTCAGCACATATGCTTTGGATAAAGATGAAAACAAATTAAGCGAAGCTTCTGGAGGCAGGGCTGAAAATGGTGAA
AGAAGTGATCTGGAAGAAGACAATGAAGGGGAAGCTCAGGAAAATGGAGCTATTGATGCCGTTCCTGTTGATGAAAATCT
TTTTACTGGGGAAGATTTGGATGAACTAGAAGAAGAATTAAACACACTTGATTTAGAAGAATGA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000021762 | ortholog_one2many | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000011958 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000005931 | ortholog_one2many | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000012965 | ortholog_one2many | 2 retrogenes | |
| Dipodomys ordii | ENSDORG00000011664 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000001563 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000007741 | possible_ortholog | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000027565 | ortholog_many2many | 5 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000011903 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000002182 | ortholog_one2many | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000012717 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000005256 | ortholog_many2many | 4 retrogenes | |
| Sorex araneus | ENSSARG00000012071 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_opri_169 | 75.18 | 76.29 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_opri_609 | 75.18 | 76.29 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOPRG00000015790 retrocopies