RetrogeneDB ID: retro_mluc_2467

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430474:137251..138453(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028446
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ZC3H15
• Ensembl ID: ENSMLUG00000007741
• Aliases: None
• Description: None

Sequence

>retro_mluc_2467
GACAAAACTTTTGGTCTAAAGAACAAGAAAGGAGCAAAGCAGCAGAAGTTTATCAAGGCTGTCACTCATCAAGTTAAGTT
TGGTCAGCAGAATCCACGCCAGGTAGCACAGAGTGAAGCTGAAAAGAAATTAAAGAAAGATGACAAGAAGAAAGAATTGC
AAGAGCTAAATGAACTGTTCAAACCTGTAGTTGCTGCTCAAAAAATAAGTAAAGCTGCTGACCCCAAGTCTGTGGTGTGC
GCCTTCTTCAAGCAAGGGCAGTGCACGAAGGGGGACAAGTGCAAGTTCTCCCACGACCTCACCCTGGAGAGGAAGGGCGA
GAAGCGAAGTGTTTACATTGATGCAAGAGATGAAGAACTTGAAAAAGATACGATGGAGAACTGGGACGAGAAGAAGCTGG
AAGAAGTGGTGAACAAGAAGCACGGTGAGGCGGAAAAGAAAAAGCCCAAAACGCAAATAGTGTGCAAGCACTTCCTTGAC
GCTATTGATACAACAAATATGGCTGGTTTTGGGTTTGCCCCGGAGGTGGCGATATTTGTATGTATCGTCATGCACTTCCT
CCAGGATTTGTATTGAAAAAAGATAAGAAGAAAGGAGAGAAAGAAGATAAAATTTCATTAGAAGATCTCATTGAAAGAGA
GCGTGCCGCCCTCGGTCCAAACGTTACCAAGATCACCCTAGAGTCTTTCCTCGCCTGGAAGAAGAGGAAGAGACAAGAAA
AGATCAACAAACTGGAGCAAGACATGGAGCGAAGGAAAGCAGACTTCAAGGCGGGGAAGGCGTTGGTGATCAGTGGTCGT
GAGGTCTTTGAATTCCGTCCTGAACTGGTTGACGATGACGATGAGGAAGCAGATGATACGAGCTACACGCAGGGAGCAGG
TGGTGATGAGGTTGATGACTTGGTGAGCATAAACGACATAGATGTGAGCCTGTACATCCCAAGAGACGTGGACGAGACGG
GCATCACGGTGGCCAGTCGTGAGCGATTCAGCGCGTACGCTGCAGAGAGAGATGAAAACAAGCTGAGCGAAGCCTCGGGG
GGCAGGGCTGAGAACAGCGAGAGGAGCGACCTGGAGGAGGACCACGGCGGGGAGGGCCCGGAGAACGGGGTCGGCGTGGC
GGTGCCCGTGGACGAGAACCTCTTCACTGGGGAGGACCTGGAGGAGCTGGAGGAGGAGCTGAACACACTGGACCTGGAGA
AA

Alignment

ORF - retro_mluc_2467 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.29 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  DKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKIS
          DKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKIS
Retrocopy DKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKIS

Parental  KGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKGEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKK
          K.ADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKGEKRSVYIDARDEELEKDTM.NWDEKKLEEVVNKK
Retrocopy KAADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKGEKRSVYIDARDEELEKDTMENWDEKKLEEVVNKK

Parental  HGEAEKKKPKTQIVCKHFLDAIEN-NKYGWFWVCPGGGDICMYRHALPPGFVLKKDKKKEEKEDEISLED
          HGEAEKKKPKTQIVCKHFLDAI...NKYGWFWVCPGGGDICMYRHALPPGFV..............SLED
Retrocopy HGEAEKKKPKTQIVCKHFLDAIDT<NKYGWFWVCPGGGDICMYRHALPPGFVXXXXXXXXXXXXXXSLED

Parental  LIERERAALGPNVTKITLESFLAWKKRKRQEKIDKLEQDMERRKADFKAGKALVISGREVFEFRPELVDD
          LIERERAALGPNVTKITLESFLAWKKRKRQEKI.KLEQDMERRKADFKAGKALVISGREVFEFRPELVDD
Retrocopy LIERERAALGPNVTKITLESFLAWKKRKRQEKINKLEQDMERRKADFKAGKALVISGREVFEFRPELVDD

Parental  DDEEADDTRYTQGAGGDEVDDSVSINDIDVSLYIPRDVDETGITVASRERFSAYAAERDENKLSEASGGR
          DDEEADDT.YTQGAGGDEVDD.VSINDIDVSLYIPRDVDETGITVASRERFSAYAAERDENKLSEASGGR
Retrocopy DDEEADDTSYTQGAGGDEVDDLVSINDIDVSLYIPRDVDETGITVASRERFSAYAAERDENKLSEASGGR

Parental  AENGERSDLEEDHGGEGPEDGVGAAVPVDENLFTGEDLEELEEELNTLDLEE
          AEN.ERSDLEEDHGGEGPE.GVG.AVPVDENLFT.........ELNTLDLE.
Retrocopy AENSERSDLEEDHGGEGPENGVGVAVPVDENLFTXXXXXXXXXELNTLDLEK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2467 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000012965	2 retrocopies	retro_cpor_1294, retro_cpor_919,
Loxodonta africana	ENSLAFG00000001563	1 retrocopy	retro_lafr_941,
Myotis lucifugus	ENSMLUG00000007741	2 retrocopies	retro_mluc_1494, retro_mluc_2467 ,
Monodelphis domestica	ENSMODG00000027565	5 retrocopies	retro_mdom_1230, retro_mdom_1321, retro_mdom_1744, retro_mdom_1942, retro_mdom_871,
Oryctolagus cuniculus	ENSOCUG00000011903	1 retrocopy	retro_ocun_886,
Ochotona princeps	ENSOPRG00000015790	2 retrocopies	retro_opri_169, retro_opri_609,
Rattus norvegicus	ENSRNOG00000005256	4 retrocopies	retro_rnor_2628, retro_rnor_284, retro_rnor_662, retro_rnor_925,