Parental gene: | Setd8, ENSRNOG00000001062 |
| Aliases: | Setd8, Pr-set7, RGD1305893 |
| Description: | histone-lysine N-methyltransferase SETD8 [Source:RefSeq peptide;Acc:NP_001233594] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 12:39429982..39445521(-) |
>ENSRNOG00000001062
ATGGTGGAGCGGAGGGGCCCGGGGAGGCCCCGCAGCGACGGGGAGAACGTGTTTGCTGGGCAGTCAAAGATCTATGCCTA
CATGAGTCCGAACAAATGCTCTGGAATGCGTTCTCCACTGCAGGAAGAGAACTCCGTCGCACATCATGAGGTCAAATGCC
CGGGGAAACCATTGGCCGGAATCTACAGGAAGCGAGAAGAGAAAAGAAACGCTGGGAATGTTATCCGAAGCGCTGTGAAG
TCAGAAGAACAGAAGAGCAAAGATACCAGGAGAGGTCCCCTGGCGCCTTTTCCAAACCAAAAACCTGAAGCAACAGAACC
TCCAAAAACTCCACCCCCGTCATGTGATTCTACCAGTGTAGCGGTTGCTAAGCAAGCCCTGAAAAAGCCCCTCAAGGGCA
AGCAGGCCCCTCGGAAGAAGTCTCAAGGGAAGACACAGCAGAATAGAAAACTCACAGATTTCTACCCCGTGCGAAGGAGC
TCCAGGAAGAGCAAAGCTGAGCTGCAGTCTGAAGAAAGGAAGAAGATAGATGAGCTAATTGAGAGCGGGAAGGAAGAGGG
CATGAAGATTGATCTAATCGATGGCAAAGGCAGGGGTGTGATTGCTACCAAGCGATTCTCCCGGGGAGACTTTGTGGTAG
AATACCATGGAGACCTCATTGAAATCACCGATGCCAAGAAGCGGGAGGCTCTGTATGCACAGGACCCCTCCACGGGCTGC
TACATGTACTATTTTCAATATCTGAGCAAAACCTACTGCGTGGATGCCACTCAAGAAACGAACCGCCTGGGGAGACTGAT
CAATCACAGTAAGTGTGGGAATTGCCAGACCAAACTGCATGACATCGACGGCGTGCCTCACCTCATCCTCATAGCCTCCC
GAGACATTGCGGCCGGGGAGGAGCTCCTGTACGACTATGGAGACCGGAGCAAGGCCTCCATCGAAGCCTACCCTTGGCTG
AAGCACTAA
ATGGTGGAGCGGAGGGGCCCGGGGAGGCCCCGCAGCGACGGGGAGAACGTGTTTGCTGGGCAGTCAAAGATCTATGCCTA
CATGAGTCCGAACAAATGCTCTGGAATGCGTTCTCCACTGCAGGAAGAGAACTCCGTCGCACATCATGAGGTCAAATGCC
CGGGGAAACCATTGGCCGGAATCTACAGGAAGCGAGAAGAGAAAAGAAACGCTGGGAATGTTATCCGAAGCGCTGTGAAG
TCAGAAGAACAGAAGAGCAAAGATACCAGGAGAGGTCCCCTGGCGCCTTTTCCAAACCAAAAACCTGAAGCAACAGAACC
TCCAAAAACTCCACCCCCGTCATGTGATTCTACCAGTGTAGCGGTTGCTAAGCAAGCCCTGAAAAAGCCCCTCAAGGGCA
AGCAGGCCCCTCGGAAGAAGTCTCAAGGGAAGACACAGCAGAATAGAAAACTCACAGATTTCTACCCCGTGCGAAGGAGC
TCCAGGAAGAGCAAAGCTGAGCTGCAGTCTGAAGAAAGGAAGAAGATAGATGAGCTAATTGAGAGCGGGAAGGAAGAGGG
CATGAAGATTGATCTAATCGATGGCAAAGGCAGGGGTGTGATTGCTACCAAGCGATTCTCCCGGGGAGACTTTGTGGTAG
AATACCATGGAGACCTCATTGAAATCACCGATGCCAAGAAGCGGGAGGCTCTGTATGCACAGGACCCCTCCACGGGCTGC
TACATGTACTATTTTCAATATCTGAGCAAAACCTACTGCGTGGATGCCACTCAAGAAACGAACCGCCTGGGGAGACTGAT
CAATCACAGTAAGTGTGGGAATTGCCAGACCAAACTGCATGACATCGACGGCGTGCCTCACCTCATCCTCATAGCCTCCC
GAGACATTGCGGCCGGGGAGGAGCTCCTGTACGACTATGGAGACCGGAGCAAGGCCTCCATCGAAGCCTACCCTTGGCTG
AAGCACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 4 .10 RPM |
| SRP017611_kidney | 16 .54 RPM |
| SRP017611_brain | 11 .43 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000010371 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000183955 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000013514 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000049327 | ortholog_one2many | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000031093 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000005085 | ortholog_one2many | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000005598 | ortholog_one2many | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000015376 | ortholog_many2many | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000015884 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_38 | 94.16 | 95.65 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_679 | 95.45 | 95.34 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_1551 | 98.38 | 95.65 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_rnor_2837 | 91.23 | 95.65 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000001062 retrocopies