RetrogeneDB ID:

retro_shar_110

Retrocopy
location
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL867574.1:421114..421831(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSSHAG00000008429
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSSHAG00000015376
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_shar_110
TACCAGATGGTGGCCCAGTACCAGATCATGACCCGGTCCCGGGTAAGGGCAGCCCTGCGGGAGGCTGAAGCCAGCACTAG
TTCTCAGGCAATGGGGGCGGCCTTCACCAGGTCCAGGAGCAGAGAAACCCTGAGCGTGCAGGGGAGGAAGAAGCCCCGCT
CACGCAAGCGCATCCTCAAGGCCAAGCATCCCTCTCAGAACTACAGGGTAACTGATTATTTCCCCATCCGGAGGAGCACT
CGGAAGAATCGAGGTGAGCTGCGTAGCGAGGAGCGCATCAGACTCAATGCGTTGATTCAGAGTGGGAAGGAGGAGGGCAT
GCGAGTGGGGCTCTTTGAGGGGAAAGGTCGTGGAGTGATCACCACCAAGCCCTTCCAACGGGGTGACTACGTGGTGGAGT
ATCATGGGGATCTCATCGACTTGGCACTTGCCAAGAAGCGGGAGGCCCGCTACGCAAAAGACCCCGACACCGGTTGCTAC
ATGTACTACTTCCATTACCGAAGTAAAGGTTACTGCGTGGACGCCACCAAAGAGTCCGGCCGTCTGGGGCGTCTCATCAA
CCACAGCAAGAGTGGCAACTGCCAGACAAAGCTGCACCCCATCAATGGGGTGCCTCATCTTATCGTGATCGCCACCAGAG
ACATCGCAGTTGGTGAAGAGCTGCTCTATGACTACGGAGACCGAAGCAAGGCCTCCCTGGAGGCCTACCCCTGGCTG

ORF - retro_shar_110 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 68.39 %
Parental protein coverage: 62.66 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalKKPPKTKQASRRKAQGKTQQNRKVTDYYPVRRSSRKSKAELQSEEKRKLDELIESGKEEGMKIDIIDGKG
KKP...K.....K......QN..VTDY.P.RRS.RK...EL.SEE...L..LI.SGKEEGM......GKG
RetrocopyKKPRSRKRILKAK---HPSQNYRVTDYFPIRRSTRKNRGELRSEERIRLNALIQSGKEEGMRVGLFEGKG
ParentalRGVIATKQFTRGEFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDATRETDRLGRLI
RGVI.TK.F.RG..VVEYHGDLI....AKKREA.YA.DP.TGCYMYYF.Y.SK.YCVDAT.E..RLGRLI
RetrocopyRGVITTKPFQRGDYVVEYHGDLIDLALAKKREARYAKDPDTGCYMYYFHYRSKGYCVDATKESGRLGRLI
ParentalNHSKCGNCQTKLHDIDGVPHLILIASRDIKAGEELLYDYGDRSKASLEAHPWL
NHSK.GNCQTKLH.I.GVPHLI.IA.RDI..GEELLYDYGDRSKASLEA.PWL
RetrocopyNHSKSGNCQTKLHPINGVPHLIVIATRDIAVGEELLYDYGDRSKASLEAYPWL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide