RetrogeneDB ID: retro_ttru_1301

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_109976:329008..329761(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SETD8
• Ensembl ID: ENSTTRG00000015884
• Aliases: None
• Description: SET domain containing (lysine methyltransferase) 8 [Source:HGNC Symbol;Acc:29489]

Sequence

>retro_ttru_1301
GAGAATGTATTTACCGGGCAATCAAAGATCTATACCTACATGAGCCCGAACAAATGCTCTGGAATGCGTTCCCCCCTTCA
GGAAGAGAACTCAGTTGCACATCACGAAGTCAAATGCCAGGGGAAGCCATTAGCCGGAATCTACAGGAAACGCGACGAGA
AAAGAAACTCTGGGAATGCAATACGAAGCTCCATGAAGGCCGAGGAACAGAAGATCAAAGACGCCAGGAGAGGTCCCCTG
GCCCCTTTTCCAAACCAAAAATCTGAAGCAACAGAACCTCCCAAAACCCCGACCTCGTCTTGTGATTCCCCCAATGCAGC
TGCCGCCAAGCAAGCCCTGAAAAAGCCCGTCAGGGCCAAACAGGCTCCCAGGAAAAAAGCTCAAGGAAAAACGCAGCAGA
ATCGTAAGCTCACAGATTTCTACCCTGTTCGAAGGAGCTCCAGGAAGAGCAAAGCTGAGCTGCAGTCTGAAGAAAGGAAA
AGAATAGACGAATTGATTGAAAGTGGGAAAGAAGAAGGAATGAAGATTGACCTCATTGACGGCAAAGGCAGGGGCGTGAT
TGCCACCAAGCAGTTCTCCCGGGGCGAGTTTGTGGTGGAATACCACGGGGACCTCATCGAGATCACCGACGCCAAGAAGC
GGGAGGCTCTGTACGCGCAAGACCCCTCCACGGGCTGCTACATGTACTATTTTCAGTATCTGAGCAAAACCTACTGCGTG
GATGCAACCAGAGAGACAAATCGCCTGGGAAGA

Alignment

ORF - retro_ttru_1301 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 100. %
• Parental protein coverage: 71.31 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ENVFTGQSKIYTYMSPNKCSGMRSPLQEENSVAHHEVKCQGKPLAGIYRKRDEKRNSGNAIRSSMKAEEQ
          ENVFTGQSKIYTYMSPNKCSGMRSPLQEENSVAHHEVKCQGKPLAGIYRKRDEKRNSGNAIRSSMKAEEQ
Retrocopy ENVFTGQSKIYTYMSPNKCSGMRSPLQEENSVAHHEVKCQGKPLAGIYRKRDEKRNSGNAIRSSMKAEEQ

Parental  KIKDARRGPLAPFPNQKSEATEPPKTPTSSCDSPNAAAAKQALKKPVRAKQAPRKKAQGKTQQNRKLTDF
          KIKDARRGPLAPFPNQKSEATEPPKTPTSSCDSPNAAAAKQALKKPVRAKQAPRKKAQGKTQQNRKLTDF
Retrocopy KIKDARRGPLAPFPNQKSEATEPPKTPTSSCDSPNAAAAKQALKKPVRAKQAPRKKAQGKTQQNRKLTDF

Parental  YPVRRSSRKSKAELQSEERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGEFVVEYHGDLIEITD
          YPVRRSSRKSKAELQSEERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGEFVVEYHGDLIEITD
Retrocopy YPVRRSSRKSKAELQSEERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGEFVVEYHGDLIEITD

Parental  AKKREALYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGR
          AKKREALYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGR
Retrocopy AKKREALYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1301 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1301 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000183955	2 retrocopies	retro_hsap_2294, retro_hsap_4320,
Macaca mulatta	ENSMMUG00000013514	1 retrocopy	retro_mmul_1579,
Mus musculus	ENSMUSG00000049327	2 retrocopies	retro_mmus_1459, retro_mmus_3478,
Otolemur garnettii	ENSOGAG00000031093	1 retrocopy	retro_ogar_1217,
Pongo abelii	ENSPPYG00000005085	2 retrocopies	retro_pabe_1347, retro_pabe_1381,
Pan troglodytes	ENSPTRG00000005598	1 retrocopy	retro_ptro_1622,
Rattus norvegicus	ENSRNOG00000001062	4 retrocopies	retro_rnor_1551, retro_rnor_2837, retro_rnor_38, retro_rnor_679,
Sarcophilus harrisii	ENSSHAG00000015376	2 retrocopies	retro_shar_110, retro_shar_115,
Tursiops truncatus	ENSTTRG00000015884	1 retrocopy	retro_ttru_1301 ,