Parental gene: | SETD8, ENSG00000183955 |
| Aliases: | SETD8, KMT5A, PR-Set7, SET07, SET8 |
| Description: | SET domain containing (lysine methyltransferase) 8 [Source:HGNC Symbol;Acc:29489] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 12:123868319..123893905(+) |
>ENSG00000183955
ATGGCTAGAGGCAGGAAGATGTCCAAGCCCCGCGCGGTGGAGGCGGCGGCGGCGGCGGCGGCGGTGGCAGCGACGGCCCC
GGGCCCGGAGATGGTGGAGCGGAGGGGCCCGGGGAGGCCCCGCACCGACGGGGAGAACGTATTTACCGGGCAGTCAAAGA
TCTATTCCTACATGAGCCCGAACAAATGCTCTGGAATGCGTTTCCCCCTTCAGGAAGAGAACTCAGTTACACATCACGAA
GTCAAATGCCAGGGGAAACCATTAGCCGGAATCTACAGGAAACGAGAAGAGAAAAGAAATGCTGGGAACGCAGTACGGAG
CGCCATGAAGTCCGAGGAACAGAAGATCAAAGACGCCAGGAAAGGTCCCCTGGTACCTTTTCCAAACCAAAAATCTGAAG
CAGCAGAACCTCCAAAAACTCCACCCTCATCTTGTGATTCCACCAATGCAGCCATCGCCAAGCAAGCCCTGAAAAAGCCC
ATCAAGGGCAAACAGGCCCCCCGAAAAAAAGCTCAAGGAAAAACGCAACAGAATCGCAAACTTACGGATTTCTACCCTGT
CCGAAGGAGCTCCAGGAAGAGCAAAGCCGAGCTGCAGTCTGAAGAAAGGAAAAGAATAGATGAATTGATTGAAAGTGGGA
AGGAAGAAGGAATGAAGATTGACCTCATCGATGGCAAAGGCAGGGGTGTGATTGCCACCAAGCAGTTCTCCCGGGGTGAC
TTTGTGGTGGAATACCACGGGGACCTCATCGAGATCACCGACGCCAAGAAACGGGAGGCTCTGTACGCACAGGACCCTTC
CACGGGCTGCTACATGTACTATTTTCAGTATCTGAGCAAAACCTACTGCGTGGATGCAACTAGAGAGACAAATCGCCTAG
GAAGACTGATCAATCACAGCAAATGTGGGAACTGCCAAACCAAACTGCACGACATCGACGGCGTACCTCACCTCATCCTC
ATCGCCTCCCGAGACATCGCGGCTGGGGAGGAGCTCCTGTATGACTATGGGGACCGCAGCAAGGCTTCCATTGAAGCCCA
CCCGTGGCTGAAGCATTAA
ATGGCTAGAGGCAGGAAGATGTCCAAGCCCCGCGCGGTGGAGGCGGCGGCGGCGGCGGCGGCGGTGGCAGCGACGGCCCC
GGGCCCGGAGATGGTGGAGCGGAGGGGCCCGGGGAGGCCCCGCACCGACGGGGAGAACGTATTTACCGGGCAGTCAAAGA
TCTATTCCTACATGAGCCCGAACAAATGCTCTGGAATGCGTTTCCCCCTTCAGGAAGAGAACTCAGTTACACATCACGAA
GTCAAATGCCAGGGGAAACCATTAGCCGGAATCTACAGGAAACGAGAAGAGAAAAGAAATGCTGGGAACGCAGTACGGAG
CGCCATGAAGTCCGAGGAACAGAAGATCAAAGACGCCAGGAAAGGTCCCCTGGTACCTTTTCCAAACCAAAAATCTGAAG
CAGCAGAACCTCCAAAAACTCCACCCTCATCTTGTGATTCCACCAATGCAGCCATCGCCAAGCAAGCCCTGAAAAAGCCC
ATCAAGGGCAAACAGGCCCCCCGAAAAAAAGCTCAAGGAAAAACGCAACAGAATCGCAAACTTACGGATTTCTACCCTGT
CCGAAGGAGCTCCAGGAAGAGCAAAGCCGAGCTGCAGTCTGAAGAAAGGAAAAGAATAGATGAATTGATTGAAAGTGGGA
AGGAAGAAGGAATGAAGATTGACCTCATCGATGGCAAAGGCAGGGGTGTGATTGCCACCAAGCAGTTCTCCCGGGGTGAC
TTTGTGGTGGAATACCACGGGGACCTCATCGAGATCACCGACGCCAAGAAACGGGAGGCTCTGTACGCACAGGACCCTTC
CACGGGCTGCTACATGTACTATTTTCAGTATCTGAGCAAAACCTACTGCGTGGATGCAACTAGAGAGACAAATCGCCTAG
GAAGACTGATCAATCACAGCAAATGTGGGAACTGCCAAACCAAACTGCACGACATCGACGGCGTACCTCACCTCATCCTC
ATCGCCTCCCGAGACATCGCGGCTGGGGAGGAGCTCCTGTATGACTATGGGGACCGCAGCAAGGCTTCCATTGAAGCCCA
CCCGTGGCTGAAGCATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 7 .18 RPM |
| bodymap2_lung | 23 .40 RPM |
| bodymap2_breast | 20 .23 RPM |
| bodymap2_adipose | 18 .57 RPM |
| bodymap2_adrenal | 20 .20 RPM |
| bodymap2_skeletal_muscle | 14 .28 RPM |
| bodymap2_thyroid | 25 .25 RPM |
| bodymap2_prostate | 31 .00 RPM |
| bodymap2_colon | 15 .70 RPM |
| bodymap2_testis | 23 .21 RPM |
| bodymap2_brain | 11 .65 RPM |
| bodymap2_heart | 14 .93 RPM |
| bodymap2_white_blood_cells | 13 .35 RPM |
| bodymap2_lymph_node | 30 .44 RPM |
| bodymap2_ovary | 18 .49 RPM |
| bodymap2_kidney | 14 .13 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Macaca mulatta | ENSMMUG00000013514 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000049327 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000031093 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000005085 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000005598 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000001062 | ortholog_one2many | 4 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000015376 | ortholog_one2many | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000015884 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_2294 | 95.71 | 92.61 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_4320 | 92.92 | 99.72 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000183955 retrocopies