Parental gene:

PSMD10, ENSPTRG00000022169

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:X:108519377..108526801(-)


>ENSPTRG00000022169
ATGGAGGGGTGTGTGTCTAACCTAATGGTCTGCAACCTGGCCTACAGCGGGAAGCTGGAAGAGTTGAAGGAGAGTATTCT
GGCCGATAAATCCCTGGCTACTAGAACTGACCAGGACAGCAGAACTGCATTGCACTGGGCATGCTCAGCTGGACATACAG
AAATTGTTGAATTTTTGTTGCAACTTGGAGTGCCAGTGAATGATAAAGACGATGCAGGTTGGTCTCCTCTTCATATTGCG
GCTTCTGCTGGCCGGGATGAGATTGTAAAAGCCCTTCTGGGAAAAGGTGCTCAAGTGAATGCTGTCAATCAAAATGGCTG
TACTCCCTTACATTATGCAGCTTCGAAAAACAGGCATGAGATCGCTGTCATGTTACTGGAAGGCGGGGCTAATCCAGATG
CTAAGGACCATTATGAGGCTACAGCAATGCACCGGGCAGCAGCCAAGGGTAACTTGAAGATGATTCATATCCTTCTGTAC
TACAAAGCATCCACAAACATCCAAGACACTGAGGGTAACACTCCTCTACACTTAGCCTGTGATGAGGAGAGAGTGGAAGA
AGCAAAACTGCTGGTGTCCCAAGGAGCAAGTATTTACATTGAGAATAAAGAAGAAAAGACACCCCTGCAAGTGGCCAAAG
GTGGCCTGGGTTTAATACTCAAGAGAATGGTGGAAGGTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 21 .68 RPM
SRP007412_cerebellum 29 .54 RPM
SRP007412_heart 10 .14 RPM
SRP007412_kidney 20 .48 RPM
SRP007412_liver 15 .02 RPM
SRP007412_testis 21 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000012006 ortholog_one2one 1 retrogene
retro_acar_134,
Callithrix jacchus ENSCJAG00000007717 ortholog_one2many 1 retrogene
retro_cjac_2515,
Cavia porcellus ENSCPOG00000015068 possible_ortholog 1 retrogene
retro_cpor_358,
Dasypus novemcinctus ENSDNOG00000001902 ortholog_one2one 5 retrogenes
retro_dnov_1194, retro_dnov_208, retro_dnov_705, retro_dnov_824, retro_dnov_835,
Homo sapiens ENSG00000101843 ortholog_one2one 3 retrogenes
retro_hsap_1214, retro_hsap_2435, retro_hsap_2737,
Gorilla gorilla ENSGGOG00000002969 ortholog_one2one 3 retrogenes
retro_ggor_1515, retro_ggor_1906, retro_ggor_945,
Macaca mulatta ENSMMUG00000016981 possible_ortholog 1 retrogene
retro_mmul_1290,
Nomascus leucogenys ENSNLEG00000014001 ortholog_one2one 2 retrogenes
retro_nleu_243, retro_nleu_690,
Oryctolagus cuniculus ENSOCUG00000010837 ortholog_one2many 1 retrogene
retro_ocun_793,
Otolemur garnettii ENSOGAG00000006419 ortholog_one2many 1 retrogene
retro_ogar_213,
Procavia capensis ENSPCAG00000005221 ortholog_one2one 1 retrogene
retro_pcap_461,
Pongo abelii ENSPPYG00000020618 ortholog_one2one 3 retrogenes
retro_pabe_1010, retro_pabe_1793, retro_pabe_2275,
Ictidomys tridecemlineatus ENSSTOG00000003783 ortholog_one2one 3 retrogenes
retro_itri_1684, retro_itri_312, retro_itri_676,
Tarsius syrichta ENSTSYG00000009920 ortholog_one2one 13 retrogenes
retro_tsyr_1160, retro_tsyr_1674, retro_tsyr_1684, retro_tsyr_1741, retro_tsyr_1830, retro_tsyr_1968, retro_tsyr_1989, retro_tsyr_2010, retro_tsyr_2138, retro_tsyr_2151, retro_tsyr_2167, retro_tsyr_674, retro_tsyr_803,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_831 88.59 65.49
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2. retro_ptro_1407 76.65 99.56
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3. retro_ptro_1851 84.04 82.74
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Download FASTA sequences of all ENSPTRG00000022169 retrocopies