Parental gene:

PSMD10, ENSG00000101843

Aliases:PSMD10, dJ889N15.2, p28, p28(GANK)
Description:proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 [Source:HGNC Symbol;Acc:9555]
Organism:Human (Homo sapiens)
Coordinates:X:107327436..107334848(-)


>ENSG00000101843
ATGGAGGGGTGTGTGTCTAACCTAATGGTCTGCAACCTGGCCTACAGCGGGAAGCTGGAAGAGTTGAAGGAGAGTATTCT
GGCCGATAAATCCCTGGCTACTAGAACTGACCAGGACAGCAGAACTGCATTGCACTGGGCATGCTCAGCTGGACATACAG
AAATTGTTGAATTTTTGTTGCAACTTGGAGTGCCAGTGAATGATAAAGACGATGCAGGTTGGTCTCCTCTTCATATTGCG
GCTTCTGCTGGCCGGGATGAGATTGTAAAAGCCCTTCTGGGAAAAGGTGCTCAAGTGAATGCTGTCAATCAAAATGGCTG
TACTCCCTTACATTATGCAGCTTCGAAAAACAGGCATGAGATCGCTGTCATGTTACTGGAAGGCGGGGCTAATCCAGATG
CTAAGGACCATTATGAGGCTACAGCAATGCACCGGGCAGCAGCCAAGGGTAACTTGAAGATGATTCATATCCTTCTGTAC
TACAAAGCATCCACAAACATCCAAGACACTGAGGGTAACACTCCTCTACACTTAGCCTGTGATGAGGAGAGAGTGGAAGA
AGCAAAACTGCTGGTGTCCCAAGGAGCAAGTATTTACATTGAGAATAAAGAAGAAAAGACACCCCTGCAAGTGGCCAAAG
GTGGCCTGGGTTTAATACTCAAGAGAATGGTGGAAGGTTAA

Library Parental gene expression (RPM)
bodymap2_liver 16 .94 RPM
bodymap2_lung 47 .03 RPM
bodymap2_breast 34 .73 RPM
bodymap2_adipose 28 .82 RPM
bodymap2_adrenal 31 .13 RPM
bodymap2_skeletal_muscle 8 .82 RPM
bodymap2_thyroid 38 .04 RPM
bodymap2_prostate 40 .43 RPM
bodymap2_colon 40 .64 RPM
bodymap2_testis 55 .41 RPM
bodymap2_brain 63 .94 RPM
bodymap2_heart 11 .76 RPM
bodymap2_white_blood_cells 42 .92 RPM
bodymap2_lymph_node 30 .94 RPM
bodymap2_ovary 48 .31 RPM
bodymap2_kidney 31 .91 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000012006 ortholog_one2one 1 retrogene
retro_acar_134,
Callithrix jacchus ENSCJAG00000007717 ortholog_one2many 1 retrogene
retro_cjac_2515,
Cavia porcellus ENSCPOG00000015068 possible_ortholog 1 retrogene
retro_cpor_358,
Dasypus novemcinctus ENSDNOG00000001902 ortholog_one2one 5 retrogenes
retro_dnov_1194, retro_dnov_208, retro_dnov_705, retro_dnov_824, retro_dnov_835,
Gorilla gorilla ENSGGOG00000002969 ortholog_one2one 3 retrogenes
retro_ggor_1515, retro_ggor_1906, retro_ggor_945,
Macaca mulatta ENSMMUG00000016981 possible_ortholog 1 retrogene
retro_mmul_1290,
Nomascus leucogenys ENSNLEG00000014001 ortholog_one2one 2 retrogenes
retro_nleu_243, retro_nleu_690,
Oryctolagus cuniculus ENSOCUG00000010837 ortholog_one2many 1 retrogene
retro_ocun_793,
Otolemur garnettii ENSOGAG00000006419 ortholog_one2many 1 retrogene
retro_ogar_213,
Procavia capensis ENSPCAG00000005221 ortholog_one2one 1 retrogene
retro_pcap_461,
Pongo abelii ENSPPYG00000020618 ortholog_one2one 3 retrogenes
retro_pabe_1010, retro_pabe_1793, retro_pabe_2275,
Pan troglodytes ENSPTRG00000022169 ortholog_one2one 3 retrogenes
retro_ptro_1407, retro_ptro_1851, retro_ptro_831,
Ictidomys tridecemlineatus ENSSTOG00000003783 ortholog_one2one 3 retrogenes
retro_itri_1684, retro_itri_312, retro_itri_676,
Tarsius syrichta ENSTSYG00000009920 ortholog_one2one 13 retrogenes
retro_tsyr_1160, retro_tsyr_1674, retro_tsyr_1684, retro_tsyr_1741, retro_tsyr_1830, retro_tsyr_1968, retro_tsyr_1989, retro_tsyr_2010, retro_tsyr_2138, retro_tsyr_2151, retro_tsyr_2167, retro_tsyr_674, retro_tsyr_803,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1214 88.67 98.01
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2. retro_hsap_2435 80.22 80.09
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3. retro_hsap_2737 84.70 80.53
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Download FASTA sequences of all ENSG00000101843 retrocopies