Parental gene:

RAB28, ENSPTRG00000015920

Aliases:None
Description:RAB28, member RAS oncogene family [Source:UniProtKB/TrEMBL;Acc:K7BAC3]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:4:13138197..13256505(-)


>ENSPTRG00000015920
ACCTCCTTAACTACGTGTTTTGCTCAAGAAACTTTTGGGAAACAGTACAAACAAACTATAGGACTGGATTTCTTTTTGAG
AAGGATAACATTGCCAGGAAACTTGAATGTTACCCTTCAAATTTGGGATATAGGAGGGCAGACAATAGGAGGCAAAATGT
TGGATAAATATATCTATGGAGCACAGGGAGTCCTCTTGGTATATGATATTACAAATTATCAAAGCTTTGAGAATTTAGAA
GATTGGTATACTGTGGTGAAGAAAGTGAGCGAGGAGTCAGAAACTCAGCCACTGGTTGCCTTGGTAGGCAATAAAATTGA
TTTGGAGCATATGCGAACAATAAAACCTGAAAAACACTTACGATTTTGCCAGGAAAATGGTTTTAGTAGCCACTTTGTCT
CAGCCAAGACGGGAGACTCTGTCTTCCTGTGCTTTCAGAAAGTTGCTGCTGAAATCCTTGGGATCAAATTAAACAAAGCA
GAAATAGAACAGTCACAGAGGGTGGTGAAGGCAGATATTGTAAACTACAACCAGGAACCTATGTCAAGGACTGTTAACCC
TCCTAGAAGCTCTATGTGTGCAGTTCAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 14 .32 RPM
SRP007412_cerebellum 14 .84 RPM
SRP007412_heart 11 .48 RPM
SRP007412_kidney 12 .97 RPM
SRP007412_liver 5 .37 RPM
SRP007412_testis 62 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001523 ortholog_one2one 1 retrogene
retro_chof_1365,
Callithrix jacchus ENSCJAG00000012136 ortholog_one2one 2 retrogenes
retro_cjac_2713, retro_cjac_4126,
Dasypus novemcinctus ENSDNOG00000007750 ortholog_one2one 4 retrogenes
retro_dnov_1426, retro_dnov_1771, retro_dnov_2419, retro_dnov_381,
Dipodomys ordii ENSDORG00000012378 ortholog_one2one 1 retrogene
retro_dord_682,
Homo sapiens ENSG00000157869 ortholog_one2one 7 retrogenes
retro_hsap_4166, retro_hsap_4259, retro_hsap_4261, retro_hsap_4263, retro_hsap_4265, retro_hsap_4317, retro_hsap_4762,
Gorilla gorilla ENSGGOG00000024190 ortholog_one2one 1 retrogene
retro_ggor_2966,
Macropus eugenii ENSMEUG00000006792 ortholog_one2one 4 retrogenes
retro_meug_1079, retro_meug_1182, retro_meug_1510, retro_meug_913,
Macaca mulatta ENSMMUG00000022025 ortholog_one2one 1 retrogene
retro_mmul_1172,
Nomascus leucogenys ENSNLEG00000016243 ortholog_one2one 1 retrogene
retro_nleu_2292,
Pongo abelii ENSPPYG00000014610 ortholog_one2one 1 retrogene
retro_pabe_3707,
Rattus norvegicus ENSRNOG00000017074 ortholog_one2one 1 retrogene
retro_rnor_1075,
Sarcophilus harrisii ENSSHAG00000009274 ortholog_one2one 1 retrogene
retro_shar_602,
Sus scrofa ENSSSCG00000022358 possible_ortholog 2 retrogenes
retro_sscr_482, retro_sscr_514,
Ictidomys tridecemlineatus ENSSTOG00000004135 ortholog_one2many 1 retrogene
retro_itri_27,
Tarsius syrichta ENSTSYG00000010939 ortholog_one2one 2 retrogenes
retro_tsyr_1450, retro_tsyr_1750,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2893 66.38 58.16
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2. retro_ptro_3171 79.56 90.82
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Download FASTA sequences of all ENSPTRG00000015920 retrocopies