Parental gene:

RAB28, ENSMMUG00000022025

Aliases:None
Description:ras-related protein Rab-28 [Source:RefSeq peptide;Acc:NP_001252653]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:5:8180015..8296360(-)


>ENSMMUG00000022025
ATGTCGGACTCTGAGGAGGAGAGCCAGGACCGGCAACTGAAAATCGTCGTGCTGGGGGACGGCGCCTCCGGGAAGACCTC
CTTAGCTACGTGTTTTGCTCAAGAAACTTTTGGGAAACGGTACAAACAAACTATAGGACTGGATTTCTTTTTGAGAAGGA
TAACATTGCCAGGAAACTTGAATGTTACCCTTCAAATTTGGGATATAGGAGGGCAGACAATAGGAGGCAAAATGTTGGAT
AAATATATCTATGGAGCACAGGGAGTCCTCTTGGTATATGATATTACAAATTATCAAAGCTTTGAGAATTTAGAAGATTG
GTATACTGTGGTGAAGAAAGTGAGCGAGGAGTCAGAAACTCAGCCACTGGTTGCCTTGGTAGGCAATAAAATTGATTTGG
AGCATATGAGAACAATAAAACCTGAAAAACACTTACGGTTTTGCCAGGAAAATGGTTTTAGTAGCCACTTTGTCTCAGCC
AAGACAGGAGACTCTGTCTTCCTGTGCTTTCAGAAAGTTGCTGCTGAAATCCTTGGGATCAAATTAAACAAAGCGGAAAT
AGAACAGTCACAGAGGGTGGTGAAGGCAGATATTGTAAACTACAACCAGGAACCTATGTCAAGAACTGTTAACCCTCCTA
GAAGCTCTATGTGTGCAGTTCAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 16 .58 RPM
SRP007412_brain 18 .82 RPM
SRP007412_cerebellum 15 .69 RPM
SRP007412_heart 6 .65 RPM
SRP007412_kidney 11 .27 RPM
SRP007412_liver 1 .94 RPM
SRP007412_testis 65 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009344 possible_ortholog 1 retrogene
retro_amel_469,
Choloepus hoffmanni ENSCHOG00000001523 ortholog_one2many 1 retrogene
retro_chof_1365,
Callithrix jacchus ENSCJAG00000012136 ortholog_one2one 2 retrogenes
retro_cjac_2713, retro_cjac_4126,
Dasypus novemcinctus ENSDNOG00000007750 ortholog_one2many 4 retrogenes
retro_dnov_1426, retro_dnov_1771, retro_dnov_2419, retro_dnov_381,
Dipodomys ordii ENSDORG00000012378 ortholog_one2many 1 retrogene
retro_dord_682,
Homo sapiens ENSG00000157869 ortholog_one2one 7 retrogenes
retro_hsap_4166, retro_hsap_4259, retro_hsap_4261, retro_hsap_4263, retro_hsap_4265, retro_hsap_4317, retro_hsap_4762,
Gorilla gorilla ENSGGOG00000024190 ortholog_one2one 1 retrogene
retro_ggor_2966,
Macropus eugenii ENSMEUG00000006792 ortholog_one2many 4 retrogenes
retro_meug_1079, retro_meug_1182, retro_meug_1510, retro_meug_913,
Nomascus leucogenys ENSNLEG00000016243 ortholog_one2one 1 retrogene
retro_nleu_2292,
Pongo abelii ENSPPYG00000014610 ortholog_one2one 1 retrogene
retro_pabe_3707,
Pan troglodytes ENSPTRG00000015920 ortholog_one2one 2 retrogenes
retro_ptro_2893, retro_ptro_3171,
Rattus norvegicus ENSRNOG00000017074 ortholog_one2one 1 retrogene
retro_rnor_1075,
Sarcophilus harrisii ENSSHAG00000009274 ortholog_one2many 1 retrogene
retro_shar_602,
Sus scrofa ENSSSCG00000022358 possible_ortholog 2 retrogenes
retro_sscr_482, retro_sscr_514,
Ictidomys tridecemlineatus ENSSTOG00000004135 ortholog_one2many 1 retrogene
retro_itri_27,
Tarsius syrichta ENSTSYG00000010939 ortholog_one2one 2 retrogenes
retro_tsyr_1450, retro_tsyr_1750,
Tursiops truncatus ENSTTRG00000003622 possible_ortholog 1 retrogene
retro_ttru_697,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1172 63.10 75.11
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Download FASTA sequences of all ENSMMUG00000022025 retrocopies