Parental gene: | WBP11, ENSPTRG00000004724 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 12:15067177..15084444(-) |
>ENSPTRG00000004724
ATGGGACGGAGATCTACATCATCCACCAAGAGTGGAAAATTTATGAACCCCACAGACCAAGCCCGAAAGGAAGCCCGGAA
GAGAGAATTAAAGAAGAACAAAAAACAGCGCATGATGGTTCGAGCTGCAGTTTTAAAGATGAAGGATCCAAAACAGATAA
TCCGAGACATGGAGAAATTGGATGAAATGGAGTTTAATCCAGTGCAACAGCCACAATTAAATGAGAAAGTACTGAAAGAC
AAGCGTAAAAAGCTGCGTGAAACCTTTGAACGTATTCTACGACTCTATGAAAAAGAGAATCCAGATATTTACAAAGAATT
GAGAAAGCTAGAAGTAGAATATGAACAGAAGAGGGCTCAACTTAGCCAATATTTTGATGCTGTCAAGAATGCTCAGCATG
TGGAAGTGGAGAGTATTCCTTTGCCAGATATGCCACATGCTCCTTCCAACATTTTGATCCAGGACATTCCACTTCCTGGT
GCCCAGCCACCCTCTATCCTAAAGAAAACCTCAGCCTATGGACCTCCAACTCGGGCAGTTTCTATCCTTCCTCTTCTTGG
ACATGGTGTTCCACGTTTGCCCCCTGGCAGAAAACCTCCTGGCCCTCCCCCTGGTCCACCTCCTCCTCAAGTCGTGCAGA
TGTATGGCCGTAAAGTGGGTTTTGCCCTAGATCTTCCCCCTCGTAGGCGAGATGAAGACATGTTATATAGTCCTGAACTT
GCCCAGCGAGGTCATGATGATGATGTTTCTAGCACCAGTGAAGATGATGGCTATCCTGAGGACATGGATCAAGATAAGCA
TGATGACAGTACTGATGACAGTGACACCGACAAATCAGATGGAGAAAGTGACGGGGATGAATTTGTGCACCGTGATGATG
GTGAGAGAGACAACAATGAAGAAAAGAAGTCAGGTCTGAGTGTACGGTTTGCAGATATGCCTGGAAAATCAAGGAAGAAA
AAGAAGAACATGAAGGAACTGACTCCTCTTCAAGCCATGATGCTTCGTATGGCAGGTCAAGAAATCCCTGAGGAGGGACG
GGAAGTAGAGGAATTTTCAGAGGACGATGATGAAGATGATTCTGATGACTCTGAAGCAGAAAAGCAATCACAAAAGCAGC
ATAAAGAGGAATCCCATTCTGATGGCACATCCACTGCTTCTTCACAGCAGCAGGCTCCGCCGCAGTCTGTTCCTCCTTCT
CAGATACAAGCACCTCCCATGCCAGGACCACCACCTCTTGGACCACCACCTGCTCCACCATTACGGCCTCCTGGGCCACC
TACAGGCCTTCCTCCTGGTCCACCTCCAGGAGCTCCTCCATTCCTGAGACCACCTGGAATGCCAGGACTCCGAGGGCCCT
TACCCCGACTTTTACCTCCAGGACCACCACCAGGCCGACCCCCTGGCCCTCCCCCAGGTCCACCTCCAGGTCTGCCTCCT
GGTCCCCCTCCTCGTGGACCCCCACCAAGGCTACCTCCCCCTGCACCTCCAGGTATTCCTCCACCTCGTCCTGGCATGAT
GCGCCCACCTTTGGTGCCTCCCCTTGGACCTGCCCCCCCTGGGCTGTTCCCACCAGCTCCCTTGCCAAACCCTGGGGTTT
TAAGTGCCCCACCCAACTTGATTCAGCGACCCAAGGCGGATGATACAAGTGCAGCCACCATTGAGAAGAAAGCCACAGCA
ACCATCAGTGCCAAGCCACAGATCACTAATCCCAAGGCAGAGATTACTCGATTTGTGCCCACTGCACTGAGAGTACGTCG
GGAGAATAAAGGGGCTACTGCTGCTCCCCAAAGAAAGTCAGAGGATGATTCTGCTGTGCCTCTTGCCAAAGCAGCACCCA
AATCTGGTCCTTCTGTTCCTGTCTCAGTACAAACTAAGGATGATGTCTATGAGGCTTTCATGAAAGAGATGGAAGGGCTA
CTGTGA
ATGGGACGGAGATCTACATCATCCACCAAGAGTGGAAAATTTATGAACCCCACAGACCAAGCCCGAAAGGAAGCCCGGAA
GAGAGAATTAAAGAAGAACAAAAAACAGCGCATGATGGTTCGAGCTGCAGTTTTAAAGATGAAGGATCCAAAACAGATAA
TCCGAGACATGGAGAAATTGGATGAAATGGAGTTTAATCCAGTGCAACAGCCACAATTAAATGAGAAAGTACTGAAAGAC
AAGCGTAAAAAGCTGCGTGAAACCTTTGAACGTATTCTACGACTCTATGAAAAAGAGAATCCAGATATTTACAAAGAATT
GAGAAAGCTAGAAGTAGAATATGAACAGAAGAGGGCTCAACTTAGCCAATATTTTGATGCTGTCAAGAATGCTCAGCATG
TGGAAGTGGAGAGTATTCCTTTGCCAGATATGCCACATGCTCCTTCCAACATTTTGATCCAGGACATTCCACTTCCTGGT
GCCCAGCCACCCTCTATCCTAAAGAAAACCTCAGCCTATGGACCTCCAACTCGGGCAGTTTCTATCCTTCCTCTTCTTGG
ACATGGTGTTCCACGTTTGCCCCCTGGCAGAAAACCTCCTGGCCCTCCCCCTGGTCCACCTCCTCCTCAAGTCGTGCAGA
TGTATGGCCGTAAAGTGGGTTTTGCCCTAGATCTTCCCCCTCGTAGGCGAGATGAAGACATGTTATATAGTCCTGAACTT
GCCCAGCGAGGTCATGATGATGATGTTTCTAGCACCAGTGAAGATGATGGCTATCCTGAGGACATGGATCAAGATAAGCA
TGATGACAGTACTGATGACAGTGACACCGACAAATCAGATGGAGAAAGTGACGGGGATGAATTTGTGCACCGTGATGATG
GTGAGAGAGACAACAATGAAGAAAAGAAGTCAGGTCTGAGTGTACGGTTTGCAGATATGCCTGGAAAATCAAGGAAGAAA
AAGAAGAACATGAAGGAACTGACTCCTCTTCAAGCCATGATGCTTCGTATGGCAGGTCAAGAAATCCCTGAGGAGGGACG
GGAAGTAGAGGAATTTTCAGAGGACGATGATGAAGATGATTCTGATGACTCTGAAGCAGAAAAGCAATCACAAAAGCAGC
ATAAAGAGGAATCCCATTCTGATGGCACATCCACTGCTTCTTCACAGCAGCAGGCTCCGCCGCAGTCTGTTCCTCCTTCT
CAGATACAAGCACCTCCCATGCCAGGACCACCACCTCTTGGACCACCACCTGCTCCACCATTACGGCCTCCTGGGCCACC
TACAGGCCTTCCTCCTGGTCCACCTCCAGGAGCTCCTCCATTCCTGAGACCACCTGGAATGCCAGGACTCCGAGGGCCCT
TACCCCGACTTTTACCTCCAGGACCACCACCAGGCCGACCCCCTGGCCCTCCCCCAGGTCCACCTCCAGGTCTGCCTCCT
GGTCCCCCTCCTCGTGGACCCCCACCAAGGCTACCTCCCCCTGCACCTCCAGGTATTCCTCCACCTCGTCCTGGCATGAT
GCGCCCACCTTTGGTGCCTCCCCTTGGACCTGCCCCCCCTGGGCTGTTCCCACCAGCTCCCTTGCCAAACCCTGGGGTTT
TAAGTGCCCCACCCAACTTGATTCAGCGACCCAAGGCGGATGATACAAGTGCAGCCACCATTGAGAAGAAAGCCACAGCA
ACCATCAGTGCCAAGCCACAGATCACTAATCCCAAGGCAGAGATTACTCGATTTGTGCCCACTGCACTGAGAGTACGTCG
GGAGAATAAAGGGGCTACTGCTGCTCCCCAAAGAAAGTCAGAGGATGATTCTGCTGTGCCTCTTGCCAAAGCAGCACCCA
AATCTGGTCCTTCTGTTCCTGTCTCAGTACAAACTAAGGATGATGTCTATGAGGCTTTCATGAAAGAGATGGAAGGGCTA
CTGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 48 .89 RPM |
| SRP007412_cerebellum | 84 .85 RPM |
| SRP007412_heart | 43 .34 RPM |
| SRP007412_kidney | 47 .88 RPM |
| SRP007412_liver | 37 .64 RPM |
| SRP007412_testis | 377 .48 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000014759 | ortholog_one2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000012926 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000021611 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000084463 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000004448 | ortholog_one2one | 3 retrogenes | |
| Macropus eugenii | ENSMEUG00000013971 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000015216 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000019299 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000017949 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000011619 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000030216 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000003926 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000017177 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000010518 | ortholog_one2many | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000015008 | ortholog_one2one | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000004323 | ortholog_one2one | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000005505 | ortholog_one2many | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000049593 | ortholog_one2many | 1 retrogene | |
| Sorex araneus | ENSSARG00000007085 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000016649 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000003394 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1260 | 78.53 | 50.70 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1637 | 78.87 | 54.45 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_3136 | 87.11 | 65.21 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000004724 retrocopies