Parental gene:

TCEA1, ENSPPYG00000018589

Aliases:None
Description:transcription elongation factor A (SII), 1 [Source:HGNC Symbol;Acc:11612]
Organism:Orangutan (Pongo abelii)
Coordinates:8:55671160..55729356(-)


>ENSPPYG00000018589
ATGGAGGACGAAGTGGTCCGCTTTGCCAAGAAGATGGACAAGATGGTGCAGAAGAAGAACGCGGCTGGAGCATTGGATTT
GCTAAAGGAGCTTAAGAATATTCCTATGACCCTGGAATTACTGCAGTCCACAAGAATCGGAATGTCAGTTAATGCTATTC
GCAAGCAGAGTACAGATGAAGAAGTTACATCTTTGGCAAAGTCTCTCATCAAATCCTGGAAAAAATTATTAGATGGGCCA
TCAACTGAGAAAGACCTTGACGAAAAGAAAAAAGAACCTGCAATTACATCGCAGAACAGCCCTGAGGCAAGAGAAGAAAG
TACTTCCAGCGGCAATGTAAGCAACAGAAAGGATGAGACAAATGCTCGAGATACTTATGTTTCATCCTTTCCTCGGGCAC
CAAGCACTTCTGATTCTGTGCGGTTGAAGTGTAGGGAGATGCTTGCTGCAGCTCTTCGAACAGGGGATGACTACATTGCA
ATTGGAGCTGATGAGGAAGAATTAGGATCTCAAATTGAAGAAGCTATATATCAAGAAATAAGGAATACAGACATGAAATA
CAAAAATAGAGTACGAAGTAGGATATCAAATCTTAAAGATGCAAAAAATCCAAATTTAAGGAAAAATGTCCTCTGTGGGA
ATATTCCTCCTGACTTATTTGCTAGAATGACAGCAGAGGAAATGGCTAGTGATGAGCTGAAAGAGATGCGGAAAAACTTG
ACCAAAGAAGCCATCAGAGAGCATCAGATGGCCAAGACTGGTGGGACCCAGACTGACTTGTTCACATGTGGCAAATGTAA
AAAGAAGAATTGCACTTACACCCAGGTACAAACCCGTAGTGCTGATGAACCCATGACAACATTTGTTGTCTGTAATGAAT
GTGGAAATCGATGGAAGATACGC

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 27 .31 RPM
SRP007412_cerebellum 40 .86 RPM
SRP007412_heart 20 .95 RPM
SRP007412_kidney 29 .47 RPM
SRP007412_liver 32 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001247 ortholog_one2one 1 retrogene
retro_chof_458,
Callithrix jacchus ENSCJAG00000014407 ortholog_one2one 1 retrogene
retro_cjac_2095,
Dasypus novemcinctus ENSDNOG00000013799 ortholog_one2one 4 retrogenes
retro_dnov_1315, retro_dnov_1853, retro_dnov_839, retro_dnov_952,
Erinaceus europaeus ENSEEUG00000009220 ortholog_one2one 1 retrogene
retro_eeur_73,
Homo sapiens ENSG00000187735 ortholog_one2one 4 retrogenes
retro_hsap_2634, retro_hsap_4159, retro_hsap_4200, retro_hsap_4243,
Gorilla gorilla ENSGGOG00000023652 ortholog_one2one 3 retrogenes
retro_ggor_2794, retro_ggor_2814, retro_ggor_2844,
Macaca mulatta ENSMMUG00000016022 ortholog_one2one 1 retrogene
retro_mmul_1146,
Mus musculus ENSMUSG00000033813 ortholog_one2one 2 retrogenes
retro_mmus_1369, retro_mmus_3559,
Nomascus leucogenys ENSNLEG00000000981 ortholog_one2one 3 retrogenes
retro_nleu_1028, retro_nleu_1374, retro_nleu_1384,
Oryctolagus cuniculus ENSOCUG00000007474 ortholog_one2many 3 retrogenes
retro_ocun_1382, retro_ocun_401, retro_ocun_852,
Pan troglodytes ENSPTRG00000020251 ortholog_one2one 2 retrogenes
retro_ptro_2851, retro_ptro_2884,
Rattus norvegicus ENSRNOG00000022323 ortholog_one2many 1 retrogene
retro_rnor_1089,
Sarcophilus harrisii ENSSHAG00000013661 ortholog_one2many 1 retrogene
retro_shar_50,
Ictidomys tridecemlineatus ENSSTOG00000021179 ortholog_one2one 1 retrogene
retro_itri_1745,
Tarsius syrichta ENSTSYG00000001030 ortholog_one2one 1 retrogene
retro_tsyr_1624,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3395 63.98 69.44
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2. retro_pabe_3436 80.00 51.50
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3. retro_pabe_3455 72.45 64.12
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Download FASTA sequences of all ENSPPYG00000018589 retrocopies