Parental gene:

UBE2L3, ENSPPYG00000011602

Aliases:None
Description:ubiquitin-conjugating enzyme E2 L3 [Source:RefSeq peptide;Acc:NP_001127614]
Organism:Orangutan (Pongo abelii)
Coordinates:22:16859879..16921895(+)


>ENSPPYG00000011602
ATGGCGGCCAGCAGGAGGCTGATGAAGGAGCTTGAAGAAATCCGCAAATGTGGGATGAAAAACTTCCGTAACATCCAGGT
TGATGAAGCTAATTTATTGACTTGGCAAGGGCTTATTGTTCCTGACAACCCTCCATATGATAAGGGGGCCTTCAGAATCG
AAATCAACTTTCCAGCAGAGTACCCATTCAAACCACCGAAGATCACATTTAAAACAAAGATCTATCACCCGAACATCGAC
GAAAAGGGGCAGGTCTGTCTGCCAGTAATTAGTGCTGAAAACTGGAAGCCAGCCACCAAAACCGACCAAGTAATCCAGTC
CCTCATAGCACTGGTGAATGACCCCCAGCCCGAGCACCCACTTCGGGCTGACCTAGCTGAAGAATACTCTAAGGACCGTA
AAAAATTCTGTAAGAATGCTGAAGAGTTTACAAAGAAATATGGGGAAAAGCGACCTGTGGACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 77 .02 RPM
SRP007412_cerebellum 69 .92 RPM
SRP007412_heart 23 .57 RPM
SRP007412_kidney 52 .80 RPM
SRP007412_liver 32 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000015284 ortholog_one2one 1 retrogene
retro_cfam_1090,
Callithrix jacchus ENSCJAG00000015818 ortholog_one2one 9 retrogenes
retro_cjac_1813, retro_cjac_1815, retro_cjac_1998, retro_cjac_2073, retro_cjac_2511, retro_cjac_2576, retro_cjac_2856, retro_cjac_3174, retro_cjac_3296,
Cavia porcellus ENSCPOG00000006044 ortholog_one2one 2 retrogenes
retro_cpor_692, retro_cpor_835,
Dipodomys ordii ENSDORG00000011406 ortholog_one2one 1 retrogene
retro_dord_357,
Equus caballus ENSECAG00000019274 possible_ortholog 1 retrogene
retro_ecab_116,
Felis catus ENSFCAG00000008008 ortholog_one2one 1 retrogene
retro_fcat_369,
Homo sapiens ENSG00000185651 possible_ortholog 4 retrogenes
retro_hsap_1094, retro_hsap_1185, retro_hsap_1338, retro_hsap_1960,
Gorilla gorilla ENSGGOG00000028073 ortholog_one2one 3 retrogenes
retro_ggor_1425, retro_ggor_861, retro_ggor_924,
Myotis lucifugus ENSMLUG00000001547 possible_ortholog 1 retrogene
retro_mluc_32,
Monodelphis domestica ENSMODG00000017665 ortholog_one2one 2 retrogenes
retro_mdom_2029, retro_mdom_956,
Mus musculus ENSMUSG00000038965 ortholog_one2one 10 retrogenes
retro_mmus_1619, retro_mmus_1620, retro_mmus_2147, retro_mmus_2212, retro_mmus_2272, retro_mmus_2315, retro_mmus_3205, retro_mmus_3714, retro_mmus_541, retro_mmus_995,
Nomascus leucogenys ENSNLEG00000000192 ortholog_one2one 1 retrogene
retro_nleu_97,
Oryctolagus cuniculus ENSOCUG00000002610 possible_ortholog 3 retrogenes
retro_ocun_826, retro_ocun_932, retro_ocun_937,
Pongo abelii ENSPPYG00000012987 other_paralog 1 retrogene
retro_pabe_3614,
Pongo abelii ENSPPYG00000014967 within_species_paralog 1 retrogene
retro_pabe_91,
Pongo abelii ENSPPYG00000015844 within_species_paralog 6 retrogenes
retro_pabe_1016, retro_pabe_1164, retro_pabe_1257, retro_pabe_2330, retro_pabe_30, retro_pabe_3670,
Pongo abelii ENSPPYG00000029727 within_species_paralog 1 retrogene
retro_pabe_3573,
Pan troglodytes ENSPTRG00000014114 ortholog_one2many 1 retrogene
retro_ptro_123,
Pteropus vampyrus ENSPVAG00000013575 possible_ortholog 1 retrogene
retro_pvam_727,
Rattus norvegicus ENSRNOG00000001862 ortholog_one2one 4 retrogenes
retro_rnor_1602, retro_rnor_2633, retro_rnor_2799, retro_rnor_526,
Sorex araneus ENSSARG00000005137 possible_ortholog 3 retrogenes
retro_sara_105, retro_sara_277, retro_sara_653,
Ictidomys tridecemlineatus ENSSTOG00000016293 possible_ortholog 2 retrogenes
retro_itri_1528, retro_itri_655,
Tetraodon nigroviridis ENSTNIG00000010600 ortholog_many2many 1 retrogene
retro_tnig_16,
Takifugu rubripes ENSTRUG00000003392 ortholog_one2many 1 retrogene
retro_trub_39,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_99 98.05 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPPYG00000011602 retrocopies