RetrogeneDB ID:

retro_sara_277

Retrocopy
location
Organism:Shrew (Sorex araneus)
Coordinates:scaffold_143410:9608..9995(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UBE2L3
Ensembl ID:ENSSARG00000005137
Aliases:None
Description:ubiquitin-conjugating enzyme E2L 3 [Source:HGNC Symbol;Acc:12488]


Retrocopy-Parental alignment summary:






>retro_sara_277
GAAGAAATACACAAATGTGGAATGAACACCTTCTGTAACATTCAAGTTGATGAAGCAAATTTGTTGAGTCAGCAATGGAA
TTTTGTTCCCAACAATTTTTCATATAATGAATGGGTCTTCAGAGTATAAATGAATTTTCCAGAGGAGTATCCATTCAAAC
TACAAAAGATCACATTTGAAACAAAGATCCGTCACCCAAAGAGCAATAGGAAGGAATGTGTGTCTGTAACTAGTGCTGAA
AACTAGAAGCAAACACCTAAGAATAATGAAGTATTCAGCCCTCACTACACTAGTGAACAACCCCGAGGATTGAGCATCCA
CTTTGGGCTGTCCTAGGAGAAGAATACCCTAAGGGTGGGAGAAAAATTCTGCAAGAATGCTAAAGAG

ORF - retro_sara_277 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 54.14 %
Parental protein coverage: 90.34 %
Number of stop codons detected: 4
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE
EEI.KCGM..F.NIQVDEANLL..Q...VP.N..Y....FR...NFP.EYPFK..KITF.TKI.HP....
RetrocopyEEIHKCGMNTFCNIQVDEANLLSQQWNFVPNNFSYNEWVFRV*MNFPEEYPFKLQKITFETKIRHPKSNR
ParentalKGQVCLPVISAENWKPATKTDQV-IQSLIALVNDPQPEHPLRADLAEEYSKDRK-KFCKNAEE
K...C..V.SAEN.K...K...V.IQ........P..EHPL.A.L.EEY.K....KFCKNA.E
RetrocopyK--ECVSVTSAEN*KQTPKNNEV<IQPSLH**TTPRIEHPLWAVLGEEYPKGGR>KFCKNAKE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Sorex araneus was not studied using RNA-Seq expression data.