Parental gene: | NACA, ENSPPYG00000004670 |
| Aliases: | None |
| Description: | nascent polypeptide-associated complex subunit alpha [Source:RefSeq peptide;Acc:NP_001125923] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 12:56500489..56513470(-) |
>ENSPPYG00000004670
ATGCCCGGCGAAGCCACAGAAACCGTCCCTGCTACAGAGCAGGAGTTGCCGCAGCCCCAGGCTGAGACAGGGTCTGGAAC
AGAATCTGACAGTGATGAATCAGTACCAGAGCTTGAAGAACAGGATTCCACCCAGGCAACCACACAACAAGCCCAGCTGG
CGGCAGCAGCTGAAATTGATGAAGAACCAGTCAGTAAAGCAAAACAGAGTCGGAGTGAAAAGAAGGCACGGAAGGCTATG
TCCAAACTGGGTCTTCGACAGGTTACAGGAGTTACTAGAGTCACTATCCGGAAATCTAAGAATATCCTCTTTGTCATCAC
AAAACCAGATGTCTACAAGAGCCCTGCTTCGGATACTTACATAGTTTTTGGGGAAGCCAAGATCGAAGATTTATCCCAGC
AAGCACAACTAGCAGCTGCTGAGAAATTCAAAGTTCAAGGTGAAGCTGTCTCAAACATTCAAGAAAACACACAGACTCCA
ACTGTACAAGAGGAGAGTGAAGAGGAAGAGGTCGATGAAACAGGTGTAGAAGTTAAGGACATAGAATTGGTCATGTCACA
AGCAAATGTGTCGAGAGCAAAGGCAGTCCGAGCCCTGAAGAACAACAGTAATGATATTGTAAATGCGATTATGGAATTAA
CAATGTAA
ATGCCCGGCGAAGCCACAGAAACCGTCCCTGCTACAGAGCAGGAGTTGCCGCAGCCCCAGGCTGAGACAGGGTCTGGAAC
AGAATCTGACAGTGATGAATCAGTACCAGAGCTTGAAGAACAGGATTCCACCCAGGCAACCACACAACAAGCCCAGCTGG
CGGCAGCAGCTGAAATTGATGAAGAACCAGTCAGTAAAGCAAAACAGAGTCGGAGTGAAAAGAAGGCACGGAAGGCTATG
TCCAAACTGGGTCTTCGACAGGTTACAGGAGTTACTAGAGTCACTATCCGGAAATCTAAGAATATCCTCTTTGTCATCAC
AAAACCAGATGTCTACAAGAGCCCTGCTTCGGATACTTACATAGTTTTTGGGGAAGCCAAGATCGAAGATTTATCCCAGC
AAGCACAACTAGCAGCTGCTGAGAAATTCAAAGTTCAAGGTGAAGCTGTCTCAAACATTCAAGAAAACACACAGACTCCA
ACTGTACAAGAGGAGAGTGAAGAGGAAGAGGTCGATGAAACAGGTGTAGAAGTTAAGGACATAGAATTGGTCATGTCACA
AGCAAATGTGTCGAGAGCAAAGGCAGTCCGAGCCCTGAAGAACAACAGTAATGATATTGTAAATGCGATTATGGAATTAA
CAATGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 96 .54 RPM |
| SRP007412_cerebellum | 158 .81 RPM |
| SRP007412_heart | 117 .64 RPM |
| SRP007412_kidney | 237 .50 RPM |
| SRP007412_liver | 217 .52 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000004175 | ortholog_one2one | 3 retrogenes | |
| Bos taurus | ENSBTAG00000010701 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000000141 | possible_ortholog | 8 retrogenes | |
| Callithrix jacchus | ENSCJAG00000010701 | possible_ortholog | 8 retrogenes | |
| Dipodomys ordii | ENSDORG00000014522 | possible_ortholog | 2 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000010458 | ortholog_one2one | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000004598 | ortholog_one2many | 6 retrogenes | |
| Microcebus murinus | ENSMICG00000016465 | possible_ortholog | 5 retrogenes | |
| Myotis lucifugus | ENSMLUG00000001169 | ortholog_one2many | 16 retrogenes | |
| Mus musculus | ENSMUSG00000061315 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017449 | ortholog_one2one | 7 retrogenes | |
| Ochotona princeps | ENSOPRG00000001781 | possible_ortholog | 3 retrogenes | |
| Procavia capensis | ENSPCAG00000007067 | possible_ortholog | 5 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000002175 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000009028 | ortholog_one2one | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000004028 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_26 | 93.49 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_633 | 84.51 | 98.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_656 | 82.16 | 98.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_764 | 97.21 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_2507 | 75.86 | 65.58 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_pabe_3279 | 91.16 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000004670 retrocopies