Parental gene:

NACA, ENSEEUG00000010458

Aliases:None
Description:nascent polypeptide-associated complex alpha subunit [Source:HGNC Symbol;Acc:7629]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_8290:11883..20118(-)


>ENSEEUG00000010458
ATGCCCGGTGAAGCCACAGAAACCGTCCCTGCTACAGAGCAGGAGTTGCCACAGCCACAGGCTGAGACAGGGTCTGGAAC
AGAATCTGATAGCGATGAGTCAGTACCAGAGCTTGAGGAACAGGATTCCACACAAGCAACCACACAACAAGCTCAGCTGG
CGGCGGCAGCTGAAATCGATGAAGAGCCAGTCAGTAAAGCAAAACAGAGCCGGAGTGAAAAGAAGGCACGAAAGGCTATG
TCCAAACTGGGTCTTCGGCAGGTTACAGGGGTTACGAGAGTCACTATCCGAAAATCAAAGAACATCCTCTTTGTCATCAC
AAAGCCAGACGTCTACAAAAGCCCAGCATCAGATACCTACATAGTTTTTGGAGAAGCAAAGATTGAAGATTTGTCTCAGC
AAGCACAGCTAGCAGCTGCAGAAAAATTCAAAGTTCAGGGTGAGGCGGTCTCAAACATCCAGGAAAACACGCAAACTCCA
ACTGTACAAGAGGAGAGTGAAGAGGAAGAGGTTGACGAAACCGGTGTAGAAGTTAAAGACATAGAATTAGTCATGTCACA
AGCAAATGTATCAAGAGCAAAGGCAGTTCGAGCCCTGAAGAACAACAGTAATGATATTGTAAATGCTATTATGGAACTAA
CAATGTAA

Library Parental gene expression (RPM)
SRP017611_liver 208 .04 RPM
SRP017611_kidney 303 .06 RPM
SRP017611_brain 136 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004175 ortholog_one2one 3 retrogenes
retro_amel_1725, retro_amel_1821, retro_amel_643,
Bos taurus ENSBTAG00000010701 ortholog_one2one 2 retrogenes
retro_btau_1237, retro_btau_1620,
Canis familiaris ENSCAFG00000000141 possible_ortholog 8 retrogenes
retro_cfam_1502, retro_cfam_1561, retro_cfam_1884, retro_cfam_1913, retro_cfam_2096, retro_cfam_2169, retro_cfam_710, retro_cfam_974,
Callithrix jacchus ENSCJAG00000010701 possible_ortholog 8 retrogenes
retro_cjac_1063, retro_cjac_1452, retro_cjac_1875, retro_cjac_2202, retro_cjac_2453, retro_cjac_2696, retro_cjac_2975, retro_cjac_3232,
Loxodonta africana ENSLAFG00000004598 ortholog_one2one 6 retrogenes
retro_lafr_1107, retro_lafr_113, retro_lafr_1251, retro_lafr_166, retro_lafr_491, retro_lafr_958,
Myotis lucifugus ENSMLUG00000001169 ortholog_one2one 16 retrogenes
retro_mluc_1147, retro_mluc_1653, retro_mluc_1668, retro_mluc_1756, retro_mluc_1767, retro_mluc_1851, retro_mluc_1881, retro_mluc_1941, retro_mluc_2587, retro_mluc_2600, retro_mluc_414, retro_mluc_492, retro_mluc_526, retro_mluc_641, retro_mluc_725, retro_mluc_861,
Nomascus leucogenys ENSNLEG00000017449 ortholog_one2one 7 retrogenes
retro_nleu_1358, retro_nleu_20, retro_nleu_2522, retro_nleu_478, retro_nleu_754, retro_nleu_839, retro_nleu_941,
Pongo abelii ENSPPYG00000004670 ortholog_one2one 6 retrogenes
retro_pabe_2507, retro_pabe_26, retro_pabe_3279, retro_pabe_633, retro_pabe_656, retro_pabe_764,
Sarcophilus harrisii ENSSHAG00000002175 ortholog_one2one 1 retrogene
retro_shar_213,
Ictidomys tridecemlineatus ENSSTOG00000009028 ortholog_one2one 1 retrogene
retro_itri_367,
Vicugna pacos ENSVPAG00000004028 possible_ortholog 2 retrogenes
retro_vpac_485, retro_vpac_611,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_170 83.11 100.00
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2. retro_eeur_207 93.71 73.95
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3. retro_eeur_242 94.42 100.00
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4. retro_eeur_334 63.89 82.33
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5. retro_eeur_520 87.16 100.00
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Download FASTA sequences of all ENSEEUG00000010458 retrocopies