RetrogeneDB - Parental gene ENSCAFG00000000141 details

							
>ENSCAFG00000000141
ATGCCTGGTGAAGCCACAGAAACCGTCCCTGCTACAGAGCAGGAGTTGCCACAGCCCCAGGCTGAGACAGCTGTGCTTCC

TGTGTCTTCAGCCTTGAGTGTCACTGCTGCCTTAGGGCAGTCTGAATCTACCCTTCCCCCTCCTTGTTCCCTGGCCCCCC

AGCAATGCCCTCTGGCAACCCCTAACCAGCCTTCCCCATTCCCTTCTCCCTCTGGTGTTGTCTCAACCCCTTTGGAAGCT

CCTTTTCCCCAGTCATCCTCTGGGACAACCCTGCCTTTGGGAGTTGCCCATTCCCCCACTGACACCCCAGCTTTCCTACC

CAACCTAAGAGGGCCTCCCATCTCCCCAGCTGCCTTAGCTCTGGCCTCTCCCATGATAACTCCGACAATGAAAGGTGCCC

ATTCCTCTTCAGCTCCCTTGGCACTGGTGGCCTTGGCTCCCCACTCAGTTCAAAAGAGTTCTGCTTATCCACTTAACCCT

CTTAGTTCTCCTCCTTTGATTGCTGTGGCTGAATCTGGGTCAGTGACATCTCTGTCCCCTCCCATTGCTTTCTTAGATCC

AAAGACCTGTCCTATTCAAGCTCCCTTGCAGGTAGACCCTAATCCAAAAGGCACCCCCATCCCTCCAGGTATAGTCAGTA

CTGTACCTTCCCATCTTGGAACTCCCTTGGCCTCTGTTCAGTCTGGAGTAGCCTCAAGTCCTCAGATGCCACCCATCACT

CCTCCTCAGTTCAAAGACATCCCTGTTTCCTCAGCTCTGACTTCTCCACAAAACCCTGAAAGCCTCAGCCTAAAGGGACC

CCTTAGTTCACCTGCTGTGTTATCTCTTTCAACTCAGTCTCTATCTGTGGCTCCTAGTATCCCTCCAGTTTCCCTCACTT

CTCCAGGCTCTCATCTTACACCTTTACATCAGAGTTCTCTTGGTTCTCCTCTTCAGACCTTAGGTCAAACAGGCCCTAAT

GTTTTGTCAAATCCTAAAGTGGATGCCATTTCTGCAGATCATTCTCCCATAGGGGCCTCTTATCCTTCTCAGAGATCTGT

AATTCCTCCACTGCCTTCTAGAAATGAGGTGGCTCCTGCTGCTATGGCTACTTTTCCAGTGGGGGCTTCAGCTTCCCCTC

TGGCTCTTTCTGTTGACAAAGATCCCTCTGCCATCATTGACATAGCCTCCTTTTCTGGCTCAAGTGTAGATACCTCTTCT

CCATTATCTCCTACAGGCTCTGTCATTCTCAAAGGCTCTCCTAATGTCACTCATCCTCAGCCTTTGGTGACCCAAATTCC

TCCTCCAGGGAGTCCAAGCTTGAAAGAAACTTCTGTTTGTTCTGTTGCAACCACCCCATTTGTTATGACTAACCTCTCTA

AAATTTCTGCAGCACCTACTACCTTTGAAGTGACTACTTGTGTGTCTCCTCCAACTTCATCAGGTCCCATAAGTAATAAG

GACTCAGCTTCCCATGCTTCCTTGGTTATGGCTCCTGTGGCTCCCAAAGAATTTTCTATTCCTCAAGTGACCCCTCTGGG

AATACCAGTCTCTCCTCTGTCAGCCCCTGAGAACCCCAAAAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

NNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Library	Parental gene expression (RPM)
SRP017611_brain	59 .46 RPM
SRP017611_kidney	400 .58 RPM
SRP017611_liver	124 .00 RPM
SRP012049_cerebellum	186 .98 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000004175	possible_ortholog	3 retrogenes	retro_amel_1725, retro_amel_1821, retro_amel_643,
Bos taurus	ENSBTAG00000010701	possible_ortholog	2 retrogenes	retro_btau_1237, retro_btau_1620,
Callithrix jacchus	ENSCJAG00000010701	possible_ortholog	8 retrogenes	retro_cjac_1063, retro_cjac_1452, retro_cjac_1875, retro_cjac_2202, retro_cjac_2453, retro_cjac_2696, retro_cjac_2975, retro_cjac_3232,
Cavia porcellus	ENSCPOG00000012654	possible_ortholog	3 retrogenes	retro_cpor_1025, retro_cpor_1365, retro_cpor_617,
Dipodomys ordii	ENSDORG00000014522	possible_ortholog	2 retrogenes	retro_dord_228, retro_dord_699,
Equus caballus	ENSECAG00000015242	possible_ortholog	1 retrogene	retro_ecab_785,
Erinaceus europaeus	ENSEEUG00000010458	possible_ortholog	5 retrogenes	retro_eeur_170, retro_eeur_207, retro_eeur_242, retro_eeur_334, retro_eeur_520,
Homo sapiens	ENSG00000196531	possible_ortholog	6 retrogenes	retro_hsap_3006, retro_hsap_3027, retro_hsap_3968, retro_hsap_3992, retro_hsap_737, retro_hsap_77,
Loxodonta africana	ENSLAFG00000004598	possible_ortholog	6 retrogenes	retro_lafr_1107, retro_lafr_113, retro_lafr_1251, retro_lafr_166, retro_lafr_491, retro_lafr_958,
Macropus eugenii	ENSMEUG00000008412	possible_ortholog	3 retrogenes	retro_meug_1630, retro_meug_2063, retro_meug_2147,
Microcebus murinus	ENSMICG00000016465	possible_ortholog	5 retrogenes	retro_mmur_1122, retro_mmur_450, retro_mmur_585, retro_mmur_684, retro_mmur_807,
Myotis lucifugus	ENSMLUG00000001169	possible_ortholog	16 retrogenes	retro_mluc_1147, retro_mluc_1653, retro_mluc_1668, retro_mluc_1756, retro_mluc_1767, retro_mluc_1851, retro_mluc_1881, retro_mluc_1941, retro_mluc_2587, retro_mluc_2600, retro_mluc_414, retro_mluc_492, retro_mluc_526, retro_mluc_641, retro_mluc_725, retro_mluc_861,
Macaca mulatta	ENSMMUG00000003073	possible_ortholog	4 retrogenes	retro_mmul_1233, retro_mmul_1933, retro_mmul_2066, retro_mmul_889,
Mus musculus	ENSMUSG00000061315	possible_ortholog	1 retrogene	retro_mmus_968,
Nomascus leucogenys	ENSNLEG00000017449	possible_ortholog	7 retrogenes	retro_nleu_1358, retro_nleu_20, retro_nleu_2522, retro_nleu_478, retro_nleu_754, retro_nleu_839, retro_nleu_941,
Ochotona princeps	ENSOPRG00000001781	possible_ortholog	3 retrogenes	retro_opri_264, retro_opri_758, retro_opri_961,
Procavia capensis	ENSPCAG00000007067	possible_ortholog	5 retrogenes	retro_pcap_150, retro_pcap_224, retro_pcap_282, retro_pcap_305, retro_pcap_324,
Pongo abelii	ENSPPYG00000004670	possible_ortholog	6 retrogenes	retro_pabe_2507, retro_pabe_26, retro_pabe_3279, retro_pabe_633, retro_pabe_656, retro_pabe_764,
Pteropus vampyrus	ENSPVAG00000008015	possible_ortholog	8 retrogenes	retro_pvam_1007, retro_pvam_1097, retro_pvam_1154, retro_pvam_1173, retro_pvam_1382, retro_pvam_1384, retro_pvam_290, retro_pvam_580,
Sarcophilus harrisii	ENSSHAG00000002175	possible_ortholog	1 retrogene	retro_shar_213,
Ictidomys tridecemlineatus	ENSSTOG00000009028	possible_ortholog	1 retrogene	retro_itri_367,
Tursiops truncatus	ENSTTRG00000002150	possible_ortholog	2 retrogenes	retro_ttru_1157, retro_ttru_760,
Vicugna pacos	ENSVPAG00000004028	possible_ortholog	2 retrogenes	retro_vpac_485, retro_vpac_611,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cfam_710	71.04	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cfam_974	85.19	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cfam_1502	76.06	98.14	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cfam_1561	77.78	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cfam_1884	100.00	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cfam_1913	84.33	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cfam_2096	77.31	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_cfam_2169	78.51	56.28	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCAFG00000000141 retrocopies

Parental gene:	NACA, ENSCAFG00000000141
Aliases:	None
Description:	Canis lupus familiaris nascent polypeptide-associated complex alpha subunit (NACA), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001252257]
Organism:	*Dog (Canis familiaris)*
Coordinates:	10:938681..949032(-)

Parental gene:

NACA, ENSCAFG00000000141