RetrogeneDB ID:

retro_mluc_1881

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429936:456514..457107(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMLUG00000001169
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1881
GTCTCTGTCACAGAATGAGTTGCCACAGCCCCAGGCTGGAAGACAGGGTCTGAAACAGAACCTGACAGTGATGAATCAGT
ACCAGAGCTCAAAGAACAAGATTCCACCAGGCAACCATACAAGCTCAGCTAGCAGCAGCAGCAGAAATCGATGAAGAACC
AGCCGGTAAACCAAAACAGAACTGAAGTGAAAAGAAGGCACAGAAGGCTATGTCCAAACTGGGTCTTTGACAGGTTATAG
GGGTTACTAGGATCACTATGACATCTAAGAATGTCCTCTTTGTCATTCCAAAGCCAAATGTCTACAAGCCTCCAGCTTCA
GCTACCGACAGAGGTTTTGGGGAAGCCAAGATCGAGGCTTTATCTCAGCAAGCACAGCTAGCAACTTCTGAGAAATTCAA
AGTTCAAGGTGAAGCTGTCTCAAACATTTAAGAAAACATAGATACTCCAACTGTACAAGAGGAGAGTGAAGAAGAAGAGG
CTGATGAAACAGGCGTGGAAGTTAAGGACATAGAACTGATCATGCCACAAGCAAATGTGTGGAGAGCAAAGGCAGTCCCA
GCCCTGAAGAGCAACAGGAATGATATGATACAT

ORF - retro_mluc_1881 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.13 %
Parental protein coverage: 93.02 %
Number of stop codons detected: 4
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalVPATEQELPQPQAETGSGTESDSDESVPELEEQDST-QATTQQAQLAAAAEIDEEPVSKAKQSRSEKKAR
V..TE.....P...TGS.TE.DSDESVPEL.EQDST.QAT.Q.AQLAAAAEIDEEP..K.KQ..SEKKA.
RetrocopyVSVTE*VATAPGWKTGSETEPDSDESVPELKEQDST<QATIQ-AQLAAAAEIDEEPAGKPKQN*SEKKAQ
ParentalKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQG
KAMSKLGL.QV.GVTR.T...SKN.LFVI.KP.VYK.PAS.T...FGEAKIE.LSQQAQLA..EKFKVQG
RetrocopyKAMSKLGL*QVIGVTRITMT-SKNVLFVIPKPNVYKPPASATDRGFGEAKIEALSQQAQLATSEKFKVQG
ParentalEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVN
EAVSNI.EN..TPTVQEESEEEE.DETGVEVKDIEL.M.QANV.RAKAV.ALK.N.ND...
RetrocopyEAVSNI*ENIDTPTVQEESEEEEADETGVEVKDIELIMPQANVWRAKAVPALKSNRNDMIH

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide