Parental gene:

VBP1, ENSOCUG00000017448

Aliases:None
Description:von Hippel-Lindau binding protein 1 (VBP1), mRNA [Source:RefSeq mRNA;Acc:NM_001171386]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018783:572533..594596(-)


>ENSOCUG00000017448
ATGAACGTGCAGAATCACAGGAGAGGGGCGGGCCTGCGCGTGAGAGAGAGCCAGTCACAGTCCCTCGATGGCCGGCGCTC
AGTAAGCAGGCATTTCCGCGCTTGCTTCCCCAACATGGCGGCCGCTAAGGACGGTTGTGGCATGGAAGTGACCGCGGGGA
ACGGGCGGCGGCTTCACCTGGGGATTCCTGAGGCAGTATTTGTGGAAGATGTAGATTCCTTCATGAAACAGCCTGGGAAT
GAGACTGCAGATACAGTACTAAAGAAGCTGGATGAGCAGTACCAGAAGTATAAATTTATGGAACTCAATCTTGCTCAAAA
GAAAAGGAGGCTAAAGGGTCAGATTCCTGAAATTAAGCAGACTTTGGAAATTTTAAAATACATGCAGAAGAAAAAAGAGT
CCACCAGTTCACTGGAGACCAGGTTCTTATTGGCAGATAATCTGTACTGCAAAGCTTCAGTTCCTCCTACTGATAAAGTG
TGTCTGTGGTTGGGGGCTAATGTAATGCTTGAATATGACATTGATGAAGCTCAGGCTTTGTTGGAAAAGAATTTATTGAC
AGCCACAAAGAATCTTGATTCTCTTGAAGAAGACCTTGACTTTCTTCGAGATCAATTTACTACCACAGAAGTCAATATGG
CCAGGGTTTATAATTGGGATGTAAAAAGAAGAAACAAAGATGATTCTGCCAAGAACAAAGTGTAA

Library Parental gene expression (RPM)
SRP017611_liver 4 .47 RPM
SRP017611_kidney 16 .12 RPM
SRP017611_brain 12 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009058 ortholog_one2many 2 retrogenes
retro_amel_1232, retro_amel_1346,
Canis familiaris ENSCAFG00000019639 ortholog_one2many 2 retrogenes
retro_cfam_1030, retro_cfam_573,
Cavia porcellus ENSCPOG00000013652 ortholog_many2many 1 retrogene
retro_cpor_466,
Dasypus novemcinctus ENSDNOG00000019432 ortholog_one2many 1 retrogene
retro_dnov_694,
Dipodomys ordii ENSDORG00000004628 ortholog_one2many 2 retrogenes
retro_dord_213, retro_dord_587,
Echinops telfairi ENSETEG00000017655 possible_ortholog 2 retrogenes
retro_etel_2085, retro_etel_552,
Latimeria chalumnae ENSLACG00000016144 ortholog_many2many 1 retrogene
retro_lcha_18,
Loxodonta africana ENSLAFG00000016507 possible_ortholog 2 retrogenes
retro_lafr_1200, retro_lafr_163,
Myotis lucifugus ENSMLUG00000015396 possible_ortholog 3 retrogenes
retro_mluc_1600, retro_mluc_2019, retro_mluc_986,
Macaca mulatta ENSMMUG00000015095 ortholog_many2many 1 retrogene
retro_mmul_124,
Mus musculus ENSMUSG00000031197 ortholog_one2many 1 retrogene
retro_mmus_2220,
Nomascus leucogenys ENSNLEG00000014475 ortholog_one2many 1 retrogene
retro_nleu_537,
Otolemur garnettii ENSOGAG00000016566 ortholog_one2many 1 retrogene
retro_ogar_3121,
Sarcophilus harrisii ENSSHAG00000002823 ortholog_many2many 1 retrogene
retro_shar_7,
Sus scrofa ENSSSCG00000012811 ortholog_one2many 1 retrogene
retro_sscr_131,
Ictidomys tridecemlineatus ENSSTOG00000006684 ortholog_one2many 1 retrogene
retro_itri_1492,
Tupaia belangeri ENSTBEG00000007833 ortholog_one2many 5 retrogenes
retro_tbel_3084, retro_tbel_3369, retro_tbel_3652, retro_tbel_553, retro_tbel_632,
Tarsius syrichta ENSTSYG00000002205 ortholog_one2many 1 retrogene
retro_tsyr_2032,
Tursiops truncatus ENSTTRG00000016258 ortholog_one2many 1 retrogene
retro_ttru_988,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_233 85.13 83.33
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2. retro_ocun_747 97.00 84.62
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Download FASTA sequences of all ENSOCUG00000017448 retrocopies