Parental gene:

VBP1, ENSTBEG00000007833

Aliases:None
Description:von Hippel-Lindau binding protein 1 [Source:HGNC Symbol;Acc:12662]
Organism:Treeshrew (Tupaia belangeri)
Coordinates:GeneScaffold_3467:3612..20681(+)


>ENSTBEG00000007833
GAAGATGTAGATTCCTTCATGAAACAGCCTGGGAATGAGACTGCAGATATAGTACTAAAGAAGCTGGATGAACAATATCA
GAAGTATAAGTTTATGGAACTCAACCTGGCGCAAAAGAAAAGAAGGCTTAAGGGTCAGATTCCTGAAATTAAACAGACTT
TGGAAATTCTAAAGTACATGCAGAAGAAAAAAGAGTCCACCAATTCACTGGAGACCAGATTCTTGCTGGCAGATAACCTG
TACTGCAAAGCTTCAGTTCCTCCTACCGATAAAGTGTGTCTGTGGTTGGGGGCTAATGTAATGCTTGAATATGATATTGA
TGAAGCTCAGGCACTGTTGGAAAAGAACTTATCGACTGCCACAAAGAATCTTGATTCTCTTGAGGAAGACCTTGACTTTC
TTCGAGATCAATTTACTACCACAGAAGTCAATATGGCCAGGGTTTATAATTGGGATGTGAAAAGAAGAAACAAAGATGAT
TCTACCAAGAACAAAGCATAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009058 ortholog_one2one 2 retrogenes
retro_amel_1232, retro_amel_1346,
Canis familiaris ENSCAFG00000019639 ortholog_one2one 2 retrogenes
retro_cfam_1030, retro_cfam_573,
Cavia porcellus ENSCPOG00000013652 ortholog_one2many 1 retrogene
retro_cpor_466,
Dasypus novemcinctus ENSDNOG00000019432 ortholog_one2one 1 retrogene
retro_dnov_694,
Dipodomys ordii ENSDORG00000004628 ortholog_one2one 2 retrogenes
retro_dord_213, retro_dord_587,
Latimeria chalumnae ENSLACG00000016144 ortholog_one2many 1 retrogene
retro_lcha_18,
Macaca mulatta ENSMMUG00000015095 ortholog_one2many 1 retrogene
retro_mmul_124,
Mus musculus ENSMUSG00000031197 ortholog_one2one 1 retrogene
retro_mmus_2220,
Nomascus leucogenys ENSNLEG00000014475 ortholog_one2one 1 retrogene
retro_nleu_537,
Oryctolagus cuniculus ENSOCUG00000017448 ortholog_one2many 2 retrogenes
retro_ocun_233, retro_ocun_747,
Otolemur garnettii ENSOGAG00000016566 ortholog_one2one 1 retrogene
retro_ogar_3121,
Sarcophilus harrisii ENSSHAG00000002823 ortholog_one2many 1 retrogene
retro_shar_7,
Sus scrofa ENSSSCG00000012811 ortholog_one2one 1 retrogene
retro_sscr_131,
Ictidomys tridecemlineatus ENSSTOG00000006684 ortholog_one2one 1 retrogene
retro_itri_1492,
Tarsius syrichta ENSTSYG00000002205 ortholog_one2one 1 retrogene
retro_tsyr_2032,
Tursiops truncatus ENSTTRG00000016258 ortholog_one2one 1 retrogene
retro_ttru_988,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tbel_553 76.79 99.40
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2. retro_tbel_632 72.73 63.25
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3. retro_tbel_3084 75.68 87.95
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4. retro_tbel_3369 96.91 58.43
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5. retro_tbel_3652 74.10 98.80
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Download FASTA sequences of all ENSTBEG00000007833 retrocopies