Parental gene:

VBP1, ENSCAFG00000019639

Aliases:None
Description:von Hippel-Lindau binding protein 1 [Source:HGNC Symbol;Acc:12662]
Organism:Dog (Canis familiaris)
Coordinates:X:123211028..123230857(+)


>ENSCAFG00000019639
ATGGCGACCGCTAAGGACGGTTGTGGCTTGGGAGAAGTGGCCACGGGGAATGGGCGGCGGCTCCACCTGGGGATTCCGGA
GGCCGTGTTTGTGGAAGATGTAGATTCCTTCATGAAACAGCCTGGGAATGAGACTGCAGATACAGTGCTGAAGAAGCTGG
ATGAACAGTACCAGAAGTACAAGTTTATGGAACTCAACCTTGCTCAAAAGAAAAGGAGGCTAAAAGGTCAGATTCCTGAA
ATTAAGCAGACTTTAGAAATTCTAAAATACATGCAGAAGAAAAAAGAGTCCACTGGTTCACTGGAGACCAGATTCTTACT
GGCAGATAACCTGTATTGCAAAGCTTCAGTTCCTCCTACTGATAAAGTGTGTCTGTGGTTGGGGGCTAATGTAATGCTTG
AATATGATATTGATGAAGCTCAGGCATTGTTGGAAAAGAATCTATCAACTGCCACAAAGAATCTTGATTCTCTTGAGGAA
GATCTTGACTTTCTTCGAGACCAATTTACTACCACTGAAGTCAATATGGCCAGGGTTTATAACTGGGATGTAAAAAGAAG
AAACAAAGATGATTCTACCAAGAACAAAGCA

Library Parental gene expression (RPM)
SRP017611_brain 23 .98 RPM
SRP017611_kidney 31 .63 RPM
SRP017611_liver 5 .95 RPM
SRP012049_cerebellum 25 .41 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009058 ortholog_one2one 2 retrogenes
retro_amel_1232, retro_amel_1346,
Cavia porcellus ENSCPOG00000013652 ortholog_one2many 1 retrogene
retro_cpor_466,
Dasypus novemcinctus ENSDNOG00000019432 ortholog_one2one 1 retrogene
retro_dnov_694,
Dipodomys ordii ENSDORG00000004628 ortholog_one2one 2 retrogenes
retro_dord_213, retro_dord_587,
Latimeria chalumnae ENSLACG00000016144 ortholog_one2many 1 retrogene
retro_lcha_18,
Macaca mulatta ENSMMUG00000015095 ortholog_one2many 1 retrogene
retro_mmul_124,
Mus musculus ENSMUSG00000031197 ortholog_one2one 1 retrogene
retro_mmus_2220,
Nomascus leucogenys ENSNLEG00000014475 ortholog_one2one 1 retrogene
retro_nleu_537,
Oryctolagus cuniculus ENSOCUG00000017448 ortholog_one2many 2 retrogenes
retro_ocun_233, retro_ocun_747,
Otolemur garnettii ENSOGAG00000016566 ortholog_one2one 1 retrogene
retro_ogar_3121,
Sarcophilus harrisii ENSSHAG00000002823 ortholog_one2many 1 retrogene
retro_shar_7,
Sus scrofa ENSSSCG00000012811 ortholog_one2one 1 retrogene
retro_sscr_131,
Ictidomys tridecemlineatus ENSSTOG00000006684 ortholog_one2one 1 retrogene
retro_itri_1492,
Tupaia belangeri ENSTBEG00000007833 ortholog_one2one 5 retrogenes
retro_tbel_3084, retro_tbel_3369, retro_tbel_3652, retro_tbel_553, retro_tbel_632,
Tarsius syrichta ENSTSYG00000002205 ortholog_one2one 1 retrogene
retro_tsyr_2032,
Tursiops truncatus ENSTTRG00000016258 ortholog_one2one 1 retrogene
retro_ttru_988,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_573 93.96 75.13
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2. retro_cfam_1030 69.92 59.90
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Download FASTA sequences of all ENSCAFG00000019639 retrocopies