Parental gene:

VBP1, ENSSSCG00000012811

Aliases:None
Description:von Hippel-Lindau binding protein 1 [Source:HGNC Symbol;Acc:12662]
Organism:Pig (Sus scrofa)
Coordinates:X:142924088..142945782(-)


>ENSSSCG00000012811
ATGGCGGACGCTAAGGACGGTTGTGGTTTGGGAGAAGTGGCTGCAGGGAACGGGCGGCGGCTCCACCTAGGGATTCCTGA
GGCCGTTTTTGTGGAAGATGTAGATTCCTTCATGAAACAGCCTGGGAATGAGACTGCAGATACAGTACTGAAGAAGCTGG
ATGAACAGTACCAGAAGTATAAGTTTATGGAGCTCAACCTTGCTCAAAAGAAAAGGAGGCTAAAAGGTCAGATTCCTGAA
ATTAAGCAAACTTTAGAAATTCTAAAATACATGCAGAAGAAAAAAGAGTCCACCAGTTCACTGGAGACCAGATTCTTACT
GGCAGATAACCTGTATTGCAAAGCTTCAGTTCCTCCTACTGATAAAGTGTGTCTGTGGTTGGGGGCTAATGTAATGCTTG
AATATGATATCGATGAAGCTCAGGCATTGTTGGAAAAGAATTTGTCAACTGCCACAAAGAACCTTGATTCTCTTGAGGAA
GACCTCGACTTTCTTCGAGATCAATTTACTACAACGGAACAAAATATGGCCAGGGTTTATAATTGGGATGTGAAAAGAAG
AAACAAAGATGATTCTACCAAGAACAAAGCATAA

Library Parental gene expression (RPM)
SRP014902_placenta 4 .38 RPM
SRP014902_testis 13 .44 RPM
SRP018856_adipose 15 .09 RPM
SRP018288_kidney 37 .53 RPM
SRP018288_lung 16 .50 RPM
SRP018288_liver 27 .50 RPM
SRP018288_heart 48 .43 RPM
SRP035408_liver 32 .20 RPM
SRP035408_brain 30 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009058 ortholog_one2one 2 retrogenes
retro_amel_1232, retro_amel_1346,
Canis familiaris ENSCAFG00000019639 ortholog_one2one 2 retrogenes
retro_cfam_1030, retro_cfam_573,
Cavia porcellus ENSCPOG00000013652 ortholog_one2many 1 retrogene
retro_cpor_466,
Dasypus novemcinctus ENSDNOG00000019432 ortholog_one2one 1 retrogene
retro_dnov_694,
Dipodomys ordii ENSDORG00000004628 ortholog_one2one 2 retrogenes
retro_dord_213, retro_dord_587,
Latimeria chalumnae ENSLACG00000016144 ortholog_one2many 1 retrogene
retro_lcha_18,
Macaca mulatta ENSMMUG00000015095 ortholog_one2many 1 retrogene
retro_mmul_124,
Mus musculus ENSMUSG00000031197 ortholog_one2one 1 retrogene
retro_mmus_2220,
Nomascus leucogenys ENSNLEG00000014475 ortholog_one2one 1 retrogene
retro_nleu_537,
Oryctolagus cuniculus ENSOCUG00000017448 ortholog_one2many 2 retrogenes
retro_ocun_233, retro_ocun_747,
Otolemur garnettii ENSOGAG00000016566 ortholog_one2one 1 retrogene
retro_ogar_3121,
Sarcophilus harrisii ENSSHAG00000002823 ortholog_one2many 1 retrogene
retro_shar_7,
Ictidomys tridecemlineatus ENSSTOG00000006684 ortholog_one2one 1 retrogene
retro_itri_1492,
Tupaia belangeri ENSTBEG00000007833 ortholog_one2one 5 retrogenes
retro_tbel_3084, retro_tbel_3369, retro_tbel_3652, retro_tbel_553, retro_tbel_632,
Tarsius syrichta ENSTSYG00000002205 ortholog_one2one 1 retrogene
retro_tsyr_2032,
Tursiops truncatus ENSTTRG00000016258 ortholog_one2one 1 retrogene
retro_ttru_988,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_131 75.81 60.91
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Download FASTA sequences of all ENSSSCG00000012811 retrocopies