RetrogeneDB ID: retro_mluc_986

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429786:7954898..7955263(-)
• Located in intron of: ENSMLUG00000014528

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: VBP1
• Ensembl ID: ENSMLUG00000015396
• Aliases: None
• Description: None

Sequence

>retro_mluc_986
GGTCAGATTCCTGAAATAAAGCAGATTTTAAAAATTTTGAAATGCATGCAGAAGAAGAAAGAGTACACCAATTCAATGGA
GACCAGATTCTTACTGGCAGATAACCTGTACTGCAAGCTTTAGTTCCTCCTAACGATAAAGTGTGTCTGTGGTTGGGGGC
TAATGTAATGCTTGAATATGATATTGATGAAGCTCAGGCATTGTTGAAAAAAAATGTAACCACTGCCACAAAGAATCTGG
ATTCTCGTGAGGAAGACCTTGACTTTCTTCAAGATCAATTTACTACCACTGAAGTCAGTATGGCCAGGGTTTATCATTGG
GACATAAAGAGAAGAAACAAAGATGATTCTACCAAGAACAAAGCA

Alignment

ORF - retro_mluc_986 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.68 %
• Parental protein coverage: 61.81 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GQIPEIKQTLEILKYMQKKKKESTNSMETRFLLADNLYCK-ASVPPTDKVCLWLGANVMLEYDIDEAQAL
          GQIPEIKQ.L.ILK.MQKKK.E.TNSMETRFLLADNLYCK.A.VPP.DKVCLWLGANVMLEYDIDEAQAL
Retrocopy GQIPEIKQILKILKCMQKKK-EYTNSMETRFLLADNLYCK<ALVPPNDKVCLWLGANVMLEYDIDEAQAL

Parental  LEKNLTTATKNLDSLEEDLDFLRDQFTTTEIYMARVYNWDVKRRNKDDSAKNKA
          L....TTATKNLDS.EEDLDFL.DQFTTTE..MARVY.WD.KRRNKDDS.KNKA
Retrocopy LXXXVTTATKNLDSREEDLDFLQDQFTTTEVSMARVYHWDIKRRNKDDSTKNKA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_986 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000013652	1 retrocopy	retro_cpor_466,
Echinops telfairi	ENSETEG00000017655	2 retrocopies	retro_etel_2085, retro_etel_552,
Latimeria chalumnae	ENSLACG00000016144	1 retrocopy	retro_lcha_18,
Loxodonta africana	ENSLAFG00000016507	2 retrocopies	retro_lafr_1200, retro_lafr_163,
Myotis lucifugus	ENSMLUG00000015396	3 retrocopies	retro_mluc_1600, retro_mluc_2019, retro_mluc_986 ,
Macaca mulatta	ENSMMUG00000015095	1 retrocopy	retro_mmul_124,
Oryctolagus cuniculus	ENSOCUG00000017448	2 retrocopies	retro_ocun_233, retro_ocun_747,
Sarcophilus harrisii	ENSSHAG00000002823	1 retrocopy	retro_shar_7,