Parental gene: | Tra2b, ENSMUSG00000022858 |
| Aliases: | None |
| Description: | transformer 2 beta homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:106016] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 16:22244548..22266005(-) |
>ENSMUSG00000022858
ATGAGCGACAGCGGCGAGCAGAACTACGGCGAGCGGGAATCCCGTTCTGCTTCCCGAAGTGGAAGTGCTCACGGATCGGG
GAAATCTGCACGGCATACACCTGCAAGGTCTCGCTCCAAGGAAGACTCAAGGCGTTCTAGATCAAAGTCCAGGTCCAGGT
CTGAATCTAGGTCTAGATCCAGAAGAAGTTCTAGAAGGCATTATACAAGGTCACGATCACGATCTCGCTCGCATAGACGA
TCCCGGAGCAGGTCTTACAGCCGAGATTATCGCAGGCGCCACAGCCACAGCCATTCTCCCATGTCTACTCGAAGGCGTCA
TGTTGGGAACCGGGCAAATCCTGACCCCAACTGTTGTCTTGGCGTGTTTGGGTTGAGCTTATACACCACAGAAAGAGACC
TAAGAGAAGTGTTCTCTAAATATGGCCCCATTGCTGATGTGTCTATTGTATATGACCAGCAATCTAGACGTTCAAGAGGA
TTTGCCTTTGTATATTTTGAAAATGTAGACGATGCCAAGGAAGCTAAAGAACGTGCCAATGGAATGGAGCTTGATGGGCG
TCGAATTAGAGTCGATTTCTCTATAACAAAAAGGCCCCATACCCCAACACCAGGAATTTATATGGGGAGACCCACTTATG
GCAGTTCTCGCCGCCGAGACTATTATGACAGAGGGTACGATCGGGGTTATGATGACCGGGACTATTACAGCAGATCATAC
AGAGGAGGAGGTGGTGGAGGAGGTGGATGGAGAGCAGCTCAAGACAGGGATCAGATTTACAGAAGACGGTCACCTTCTCC
TTACTACAGTCGTGGAGGATACAGGTCACGTTCTCGATCACGATCCTACTCACCTCGTCGCTACTAA
ATGAGCGACAGCGGCGAGCAGAACTACGGCGAGCGGGAATCCCGTTCTGCTTCCCGAAGTGGAAGTGCTCACGGATCGGG
GAAATCTGCACGGCATACACCTGCAAGGTCTCGCTCCAAGGAAGACTCAAGGCGTTCTAGATCAAAGTCCAGGTCCAGGT
CTGAATCTAGGTCTAGATCCAGAAGAAGTTCTAGAAGGCATTATACAAGGTCACGATCACGATCTCGCTCGCATAGACGA
TCCCGGAGCAGGTCTTACAGCCGAGATTATCGCAGGCGCCACAGCCACAGCCATTCTCCCATGTCTACTCGAAGGCGTCA
TGTTGGGAACCGGGCAAATCCTGACCCCAACTGTTGTCTTGGCGTGTTTGGGTTGAGCTTATACACCACAGAAAGAGACC
TAAGAGAAGTGTTCTCTAAATATGGCCCCATTGCTGATGTGTCTATTGTATATGACCAGCAATCTAGACGTTCAAGAGGA
TTTGCCTTTGTATATTTTGAAAATGTAGACGATGCCAAGGAAGCTAAAGAACGTGCCAATGGAATGGAGCTTGATGGGCG
TCGAATTAGAGTCGATTTCTCTATAACAAAAAGGCCCCATACCCCAACACCAGGAATTTATATGGGGAGACCCACTTATG
GCAGTTCTCGCCGCCGAGACTATTATGACAGAGGGTACGATCGGGGTTATGATGACCGGGACTATTACAGCAGATCATAC
AGAGGAGGAGGTGGTGGAGGAGGTGGATGGAGAGCAGCTCAAGACAGGGATCAGATTTACAGAAGACGGTCACCTTCTCC
TTACTACAGTCGTGGAGGATACAGGTCACGTTCTCGATCACGATCCTACTCACCTCGTCGCTACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 36 .47 RPM |
| SRP007412_cerebellum | 41 .08 RPM |
| SRP007412_heart | 31 .25 RPM |
| SRP007412_kidney | 45 .26 RPM |
| SRP007412_liver | 29 .14 RPM |
| SRP007412_testis | 82 .19 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000001697 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000005781 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000003157 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000031134 | within_species_paralog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000031167 | within_species_paralog | 4 retrogenes | |
| Ochotona princeps | ENSOPRG00000007990 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000001783 | ortholog_one2one | 4 retrogenes | |
| Tarsius syrichta | ENSTSYG00000000388 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_756 | 91.42 | 80.56 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_1187 | 77.72 | 68.75 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmus_2253 | 93.75 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmus_2313 | 92.81 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_mmus_3139 | 75.70 | 72.22 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_mmus_3617 | 94.46 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000022858 retrocopies