Parental gene: | Tra2b, ENSRNOG00000001783 |
| Aliases: | Tra2b, Sfrs10, Srsf10 |
| Description: | Transformer-2 protein homolog beta [Source:UniProtKB/Swiss-Prot;Acc:P62997] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 11:85462040..85480254(+) |
>ENSRNOG00000001783
ATGAGCGACAGCGGCGAGCAGAACTACGGCGAGCGGGAATCCCGTTCTGCTTCCCGAAGTGGAAGTGCTCATGGATCGGG
GAAATCTGCACGGCACACACCTGCAAGGTCTCGCTCCAAGGAAGATTCAAGACGTTCTAGATCAAAGTCAAGATCCAGAT
CTGAATCTAGGTCTAGATCCAGAAGAAGTTCTAGAAGGCATTATACAAGGTCACGATCACGATCTCGCTCTCATAGACGA
TCCCGGAGCAGGTCTTACAGCCGAGACTATCGCAGACGCCACAGCCACAGCCATTCTCCCATGTCTACTCGAAGGCGTCA
TGTTGGGAACCGGGCAAATCCTGACCCCAACTGTTGTCTTGGAGTGTTTGGATTGAGCTTGTACACCACAGAAAGAGATC
TAAGAGAAGTGTTCTCTAAGTATGGCCCCATTGCTGATGTGTCTATTGTGTATGACCAGCAGTCTAGACGGTCAAGAGGA
TTTGCCTTTGTATATTTTGAAAATGTAGATGATGCCAAGGAAGCTAAAGAACGTGCCAATGGAATGGAGCTTGATGGACG
TCGGATTAGGGTCGATTTCTCTATAACAAAAAGGCCCCATACCCCAACACCAGGAATTTATATGGGGAGACCCACTTATG
GCAGTTCACGACGCCGGGACTATTATGACCGAGGATATGATCGGGGTTATGATGACCGGGACTATTACAGCAGATCATAC
AGAGGAGGAGGTGGAGGAGGAGGTGGATGGAGAGCAGCTCAAGATAGAGATCAGATTTACAGAAGGCGGTCACCTTCTCC
TTACTACAGTCGTGGAGGATACAGGTCTCGTTCTCGATCAAGATCCTACTCACCTCGTCGCTATTAA
ATGAGCGACAGCGGCGAGCAGAACTACGGCGAGCGGGAATCCCGTTCTGCTTCCCGAAGTGGAAGTGCTCATGGATCGGG
GAAATCTGCACGGCACACACCTGCAAGGTCTCGCTCCAAGGAAGATTCAAGACGTTCTAGATCAAAGTCAAGATCCAGAT
CTGAATCTAGGTCTAGATCCAGAAGAAGTTCTAGAAGGCATTATACAAGGTCACGATCACGATCTCGCTCTCATAGACGA
TCCCGGAGCAGGTCTTACAGCCGAGACTATCGCAGACGCCACAGCCACAGCCATTCTCCCATGTCTACTCGAAGGCGTCA
TGTTGGGAACCGGGCAAATCCTGACCCCAACTGTTGTCTTGGAGTGTTTGGATTGAGCTTGTACACCACAGAAAGAGATC
TAAGAGAAGTGTTCTCTAAGTATGGCCCCATTGCTGATGTGTCTATTGTGTATGACCAGCAGTCTAGACGGTCAAGAGGA
TTTGCCTTTGTATATTTTGAAAATGTAGATGATGCCAAGGAAGCTAAAGAACGTGCCAATGGAATGGAGCTTGATGGACG
TCGGATTAGGGTCGATTTCTCTATAACAAAAAGGCCCCATACCCCAACACCAGGAATTTATATGGGGAGACCCACTTATG
GCAGTTCACGACGCCGGGACTATTATGACCGAGGATATGATCGGGGTTATGATGACCGGGACTATTACAGCAGATCATAC
AGAGGAGGAGGTGGAGGAGGAGGTGGATGGAGAGCAGCTCAAGATAGAGATCAGATTTACAGAAGGCGGTCACCTTCTCC
TTACTACAGTCGTGGAGGATACAGGTCTCGTTCTCGATCAAGATCCTACTCACCTCGTCGCTATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 34 .02 RPM |
| SRP017611_kidney | 47 .24 RPM |
| SRP017611_brain | 40 .55 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000001697 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000013345 | possible_ortholog | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000006313 | possible_ortholog | 1 retrogene | |
| Microcebus murinus | ENSMICG00000010611 | possible_ortholog | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000005781 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000003157 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000022858 | ortholog_one2one | 6 retrogenes | |
| Ochotona princeps | ENSOPRG00000007990 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000000866 | within_species_paralog | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000002437 | possible_ortholog | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000006720 | possible_ortholog | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000015927 | possible_ortholog | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000000388 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_1130 | 72.54 | 81.94 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_1915 | 95.85 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_2156 | 72.14 | 96.18 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_rnor_2807 | 71.49 | 74.31 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000001783 retrocopies