Parental gene:

Hnrnpk, ENSMUSG00000021546

Aliases:Hnrnpk, Hnrpk, KBBP, NOVA
Description:heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
Organism:Mouse (Mus musculus)
Coordinates:13:58391141..58403343(-)


>ENSMUSG00000021546
ATGGAGACCGAACAGCCAGAAGAAACCTTCCCCAACACCGAAACCAATGGTGAATTTGGTAAACGCCCTGCAGAAGATAT
GGAAGAGGAGCAAGCCTTTAAAAGATCTAGAAATACTGATGAGATGGTTGAATTGCGCATTTTGCTTCAGAGCAAGAATG
CTGGAGCAGTGATTGGAAAAGGAGGCAAGAATATTAAGGCTCTCCGTACAGACTACAATGCCAGTGTTTCAGTCCCAGAC
AGCAGTGGCCCCGAGCGCATACTGAGTATCAGTGCTGATATTGAGACGATTGGAGAAATTCTGAAGAAAATCATCCCTAC
CTTGGAAGAGGGCCTGCAGTTGCCATCACCCACTGCAACCAGCCAGCTCCCGCTCGAATCTGATGCTGTGGAATGCTTAA
ATTACCAACATTATAAAGGAAGTGACTTTGATTGCGAGTTGAGACTGTTGATTCATCAGAGTCTGGCAGGAGGAATAATT
GGTGTTAAAGGTGCTAAAATCAAAGAACTTCGAGAAAACACTCAGACAACAATCAAGCTTTTCCAGGAGTGCTGCCCTCA
CTCTACTGACAGAGTTGTTCTTATTGGAGGAAAACCTGATAGGGTTGTAGAATGCATCAAGATCATCCTTGACCTTATAT
CTGAGTCTCCCATCAAAGGACGTGCACAACCTTATGATCCCAACTTTTATGATGAGACCTATGATTATGGTGGTTTTACA
ATGATGTTTGATGACCGCCGAGGACGACCTGTGGGATTCCCCATGAGGGGAAGAGGTGGTTTTGACAGAATGCCTCCTGG
TCGGGGTGGGCGTCCCATGCCTCCTTCTAGAAGAGATTATGATGATATGAGCCCTCGTCGAGGACCTCCACCACCACCAC
CTGGTCGAGGTGGCCGGGGTGGCAGCAGAGCCCGGAATCTGCCTCTTCCTCCTCCACCACCACCCAGAGGGGGAGATCTA
ATGGCTTATGACAGAAGAGGAAGGCCTGGAGACCGCTATGATGGCATGGTTGGGTTCAGTGCTGATGAAACTTGGGATTC
TGCAATTGACACATGGAGCCCATCAGAATGGCAAATGGCTTATGAACCACAGGGTGGTTCTGGATATGACTATTCTTATG
CAGGGGGCCGTGGCTCATATGGTGATCTTGGCGGACCTATTATCACTACACAAGTAACTATTCCCAAAGATTTGGCTGGA
TCTATTATTGGCAAAGGTGGTCAGCGGATTAAACAAATTCGTCATGAATCTGGAGCATCAATCAAAATTGATGAACCTTT
AGAAGGATCTGAAGATCGGATCATTACCATTACAGGAACACAGGACCAGATACAGAACGCACAGTATTTGCTGCAGAACA
GTGTGAAGCAGTATTCTGGAAAGTTTTTCTAA

Library Parental gene expression (RPM)
SRP007412_brain 205 .71 RPM
SRP007412_cerebellum 176 .42 RPM
SRP007412_heart 146 .65 RPM
SRP007412_kidney 198 .58 RPM
SRP007412_liver 172 .59 RPM
SRP007412_testis 166 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000021131 ortholog_one2one 2 retrogenes
retro_btau_468, retro_btau_605,
Dasypus novemcinctus ENSDNOG00000000026 possible_ortholog 4 retrogenes
retro_dnov_1433, retro_dnov_1820, retro_dnov_2316, retro_dnov_2638,
Dipodomys ordii ENSDORG00000016024 possible_ortholog 1 retrogene
retro_dord_673,
Homo sapiens ENSG00000165119 ortholog_one2one 3 retrogenes
retro_hsap_2323, retro_hsap_2674, retro_hsap_3385,
Loxodonta africana ENSLAFG00000026567 possible_ortholog 1 retrogene
retro_lafr_809,
Macropus eugenii ENSMEUG00000006975 possible_ortholog 3 retrogenes
retro_meug_271, retro_meug_357, retro_meug_484,
Microcebus murinus ENSMICG00000015780 ortholog_one2one 3 retrogenes
retro_mmur_1562, retro_mmur_235, retro_mmur_448,
Myotis lucifugus ENSMLUG00000005871 ortholog_one2one 2 retrogenes
retro_mluc_128, retro_mluc_561,
Macaca mulatta ENSMMUG00000018871 possible_ortholog 1 retrogene
retro_mmul_2111,
Monodelphis domestica ENSMODG00000008402 possible_ortholog 1 retrogene
retro_mdom_1666,
Mus musculus ENSMUSG00000056851 other_paralog 1 retrogene
retro_mmus_274,
Nomascus leucogenys ENSNLEG00000003486 possible_ortholog 3 retrogenes
retro_nleu_1178, retro_nleu_1815, retro_nleu_973,
Otolemur garnettii ENSOGAG00000007478 possible_ortholog 3 retrogenes
retro_ogar_2635, retro_ogar_2966, retro_ogar_3086,
Pongo abelii ENSPPYG00000019327 ortholog_one2one 3 retrogenes
retro_pabe_2105, retro_pabe_2106, retro_pabe_42,
Sarcophilus harrisii ENSSHAG00000017109 possible_ortholog 1 retrogene
retro_shar_820,
Sus scrofa ENSSSCG00000022760 possible_ortholog 1 retrogene
retro_sscr_437,
Tupaia belangeri ENSTBEG00000001289 ortholog_one2one 1 retrogene
retro_tbel_2491,
Tarsius syrichta ENSTSYG00000001196 possible_ortholog 3 retrogenes
retro_tsyr_1664, retro_tsyr_1796, retro_tsyr_2149,
Tursiops truncatus ENSTTRG00000004906 ortholog_one2many 1 retrogene
retro_ttru_1622,
Tursiops truncatus ENSTTRG00000016693 ortholog_one2many 7 retrogenes
retro_ttru_1144, retro_ttru_180, retro_ttru_1922, retro_ttru_444, retro_ttru_813, retro_ttru_930, retro_ttru_937,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_1131 95.48 75.23
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2. retro_mmus_2137 71.25 70.19
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Download FASTA sequences of all ENSMUSG00000021546 retrocopies