Parental gene:

HNRNPK, ENSSSCG00000022760

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein K [Source:HGNC Symbol;Acc:5044]
Organism:Pig (Sus scrofa)
Coordinates:10:35105048..35115115(+)


>ENSSSCG00000022760
ATGGAAACGGAACAACGAACGGACAACCGGAGGAACCTTTCCCACACTGAAACCAATGGCGAATTTGGTAAACGCCCTGC
TGAAGATATGGAAGAAGAACAAGCTTTTAAAAGATCTAGAAACACTGATGAGATGGTTGAACTGCGCATCCTGCTTCAGA
GCAAGAATGCTGGGGCAGTGATTGGGAAAGGAGGCAAGAATATTAAGGCTCTCCGTACAGACTACAATGCCAGTGTTTCA
GTCCCAGACAGCAGTGGCCCCGAGCGCATATTGAGTATCAGTGCCGATATTGAAACAATTGGAGAAATTCTGAAGAAAAT
CATCCCTACCTTAGAAGAGGGCCTGCAGTTGCCATCACCCACTGCAACCAGCCAGCTCCCGCTCGAATCTGATGCTGTGG
AATGCTTAAATTACCAGCACTATAAAGGAAGCGACTTTGACTGCGAGTTGAGATTGTTGATTCATCAGAGTCTGGCAGGA
GGAATTATTGGGGTCAAAGGTGCTAAAATCAAAGAACTTCGGGAGAACACTCAGACAACAATCAAGCTTTTCCAGGAATG
TTGTCCTCAGTCCACTGACAGAGTCGTTCTCATTGGAGGAAAACCTGATAGGGTTGTAGAGTGTATAAAGATCATCCTTG
ATCTCATATCAGAGTCGCCCATTAAAGGACGTGCTCAGCCTTATGATCCCAATTTTTATGATGAAACGTATGATTATGGT
GGCTTTACAATGATGTTTGATGATCGCCGTGGACGTCCTGTGGGATTTCCCATGCGGGGAAGAGGTGGTTTTGACAGAAT
GCCTCCTGGTCGAGGAGGGCGTCCCATGCCTCCATCTAGAAGAGATTATGACGATATGAGCCCTCGTCGAGGACCTCCTC
CCCCTCCTCCTGGACGAGATCTAATGGCTTATGACAGAAGAGGAAGACCTGGAGACCGCTATGATGGCATGGTTGGTTTC
AGTGCTGATGAAACCTGGGACTCTGCAATTGATACATGGAGCCCATCAGAGTGGCAGATGGCTTATGAACCACAGGGTGG
ATCTGGATATGATTATTCCTATGCAGGGGGTCGTGGCTCATACGGTGATCTTGGTGGACCTATTATTACTACACAAGTAA
CTATTCCCAAAGATTTGGCTGGATCTATTATTGGCAAAGGTGGTCAGCGGATTAAACAAATCCGTCATGAATCAGGAGCT
TCGATCAAAATTGATGAGCCTTTAGAAGGGTCCGAAGATCGGATCATTACCATTACAGGAACACAGGACCAGATACAGAA
TGCACAGTATTTGCTGCAGAACAGTGTGAAGCAGTATTCTGGAAAGTTTTTCTAA

Library Parental gene expression (RPM)
SRP014902_placenta 113 .75 RPM
SRP014902_testis 261 .11 RPM
SRP018856_adipose 309 .97 RPM
SRP018288_kidney 343 .59 RPM
SRP018288_lung 371 .05 RPM
SRP018288_liver 256 .66 RPM
SRP018288_heart 194 .83 RPM
SRP035408_liver 204 .26 RPM
SRP035408_brain 219 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Gorilla gorilla ENSGGOG00000015500 possible_ortholog 2 retrogenes
retro_ggor_1764, retro_ggor_1866,
Myotis lucifugus ENSMLUG00000005871 possible_ortholog 2 retrogenes
retro_mluc_128, retro_mluc_561,
Macaca mulatta ENSMMUG00000018871 possible_ortholog 1 retrogene
retro_mmul_2111,
Monodelphis domestica ENSMODG00000008402 ortholog_one2one 1 retrogene
retro_mdom_1666,
Mus musculus ENSMUSG00000021546 possible_ortholog 2 retrogenes
retro_mmus_1131, retro_mmus_2137,
Otolemur garnettii ENSOGAG00000007478 ortholog_one2one 3 retrogenes
retro_ogar_2635, retro_ogar_2966, retro_ogar_3086,
Pongo abelii ENSPPYG00000019327 possible_ortholog 3 retrogenes
retro_pabe_2105, retro_pabe_2106, retro_pabe_42,
Sarcophilus harrisii ENSSHAG00000017109 ortholog_one2one 1 retrogene
retro_shar_820,
Sus scrofa ENSSSCG00000000274 other_paralog 1 retrogene
retro_sscr_61,
Tursiops truncatus ENSTTRG00000004906 possible_ortholog 1 retrogene
retro_ttru_1622,
Tursiops truncatus ENSTTRG00000016693 possible_ortholog 7 retrogenes
retro_ttru_1144, retro_ttru_180, retro_ttru_1922, retro_ttru_444, retro_ttru_813, retro_ttru_930, retro_ttru_937,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_437 95.33 67.34
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Download FASTA sequences of all ENSSSCG00000022760 retrocopies