Parental gene:

Papola, ENSMUSG00000021111

Aliases:Papola, Pap, PapIII, Plap
Description:poly (A) polymerase alpha [Source:MGI Symbol;Acc:MGI:109301]
Organism:Mouse (Mus musculus)
Coordinates:12:105784693..105838944(+)


>ENSMUSG00000021111
ATGCCGTTTCCAGTTACAACGCAGGGATCACAACAAACGCAGCCACCACAGAGGCACTATGGCATTACCTCTCCTATCAG
CTTAGCGGCCCCCAAGGAGACTGACTGCCTACTCACACAGAAGCTCATCGAGACGCTGAAGCCCTTTGGGGTTTTTGAAG
AAGAAGAGGAACTGCAGCGCAGGATTTTAATTTTGGGAAAATTAAATAACCTGGTGAAAGAATGGATTCGAGAAATCAGT
GAAAGCAAGAATCTCCCACAATCTGTAATTGAAAATGTTGGAGGGAAGATTTTTACATTTGGATCTTACAGACTAGGAGT
CCACACGAAAGGTGCTGATATTGATGCGTTGTGTGTTGCACCAAGACATGTTGATCGAAGTGACTTTTTCACCTCATTCT
ATGATAAATTGAAATTACAAGAAGAAGTGAAAGATTTAAGAGCTGTTGAAGAGGCATTTGTACCAGTTATCAAACTCTGT
TTTGATGGAATAGAGATTGATATTTTGTTTGCAAGATTAGCACTGCAGACTATTCCAGAAGATTTGGACCTACGAGATGA
CAGTCTGCTTAAAAACCTAGATATAAGATGCATAAGAAGCCTTAATGGTTGCAGGGTAACCGATGAAATTTTACATCTAG
TACCAAACATTGACAACTTCAGGTTAACTCTGAGAGCCATCAAACTGTGGGCCAAACGGCACAACATCTATTCCAATATA
TTAGGTTTCCTCGGTGGTGTTTCCTGGGCTATGCTAGTAGCAAGAACTTGCCAGCTTTATCCAAATGCAATAGCATCAAC
TCTTGTACATAAATTTTTCTTGGTATTTTCTAAATGGGAATGGCCAAATCCAGTGCTATTGAAACAGCCTGAAGAATGCA
ATCTTAATTTGCCTGTGTGGGACCCAAGGGTAAACCCCAGTGATAGGTACCATCTTATGCCTATAATTACACCAGCATAC
CCACAGCAGAACTCCACGTACAATGTGTCCGTTTCAACACGGATGGTCATGGTTGAGGAGTTTAAACAAGGTCTTGCTAT
CACAGATGAAATTTTGCTGAGTAAGGCAGAGTGGTCCAAACTTTTTGAAGCTCCAAACTTCTTTCAGAAGTACAAGCATT
ATATTGTACTTCTAGCAAGTGCGCCCACGGAAAAGCAGCGTCTGGAATGGGTGGGCTTGGTGGAATCAAAAATCCGCATC
CTGGTTGGAAGCTTGGAGAAGAATGAGTTTATTACACTGGCTCATGTGAATCCCCAGTCATTTCCAGCCCCCAAAGAAAG
TCCTGACAGGGAAGAATTTCGCACAATGTGGGTGATTGGGTTAGTGTTTAAAAAAACTGAAAACTCTGAAAATCTCAGTG
TCGACCTCACCTATGATATCCAGTCTTTCACAGACACAGTTTATAGGCAAGCAATAAACAGCAAAATGTTTGAGTTGGAT
ATGAAGATTGCAGCAATGCATGTGAAGAGAAAGCAACTCCATCAGCTGCTGCCTAGTCACGTGCTTCAGAAGAGGAAGAA
GCATTCAACAGAAGGAGTCAAGTTAACAGCTCTGAATGACAGCAGCCTTGACTTGTCTATGGACAGTGATAACAGCATGT
CTGTGCCTTCACCCACCAGTGCTATGAAGACCAGTCCATTGAATAGTTCTGGCAGCTCCCAGGGCAGAAACAGTCCTGCT
CCAGCTGTGACCGCAGCATCTGTGACCAGCATCCAGGCTTCTGAGGTTTCTGTACCGCAAGCAAATTCCAGTGAAAGCCC
AGGGGGTCCATCGAGCGAAAGCATTCCTCAAACTGCCACACAGCCAGCCATTTCTCCACCACCAAAGCCTACAGTCTCCA
GAGTTGTCTCCTCAACACGACTGGTAAACCCATCGCCTAGACCTTCAGGAAACACAGCAACAAAAGTCCCTAATCCTATA
GTAGGAGTCAAGAGAACGTCCTCACCCAATAAAGAAGAAAGTCCTAAGAAAACCAAAACAGAAGAGGATGAAACAAGTGA
AGATGCTAACTGTCTTGCTTTGAGTGGACATGATAAAACAGAGACAAAGGAACAAGTTGATCTGGAGACAAGTGCGGTTC
AATCAGAAACTGTTCCGGCATCGGCTTCTCTGTTGGCCTCTCAGAAAACATCCAGTACAGACCTTTCTGATATCCCTGCT
CTCCCTGCAAATCCTATTCCTGTTATCAAGAATTCAATAAAACTGAGACTGAATCGGTAA

Library Parental gene expression (RPM)
SRP007412_brain 108 .61 RPM
SRP007412_cerebellum 113 .59 RPM
SRP007412_heart 78 .51 RPM
SRP007412_kidney 134 .82 RPM
SRP007412_liver 95 .63 RPM
SRP007412_testis 129 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014142 possible_ortholog 1 retrogene
retro_amel_517,
Bos taurus ENSBTAG00000004054 possible_ortholog 1 retrogene
retro_btau_1078,
Canis familiaris ENSCAFG00000017783 possible_ortholog 1 retrogene
retro_cfam_1783,
Callithrix jacchus ENSCJAG00000006512 possible_ortholog 2 retrogenes
retro_cjac_1763, retro_cjac_543,
Homo sapiens ENSG00000090060 possible_ortholog 1 retrogene
retro_hsap_30,
Gorilla gorilla ENSGGOG00000006287 possible_ortholog 1 retrogene
retro_ggor_202,
Loxodonta africana ENSLAFG00000000946 ortholog_one2one 1 retrogene
retro_lafr_895,
Myotis lucifugus ENSMLUG00000010922 possible_ortholog 1 retrogene
retro_mluc_1396,
Macaca mulatta ENSMMUG00000018610 possible_ortholog 1 retrogene
retro_mmul_1675,
Monodelphis domestica ENSMODG00000012887 ortholog_many2many 2 retrogenes
retro_mdom_1714, retro_mdom_1916,
Mustela putorius furo ENSMPUG00000003054 possible_ortholog 1 retrogene
retro_mputfur_1375,
Nomascus leucogenys ENSNLEG00000000625 possible_ortholog 1 retrogene
retro_nleu_2771,
Otolemur garnettii ENSOGAG00000004611 possible_ortholog 1 retrogene
retro_ogar_987,
Procavia capensis ENSPCAG00000004199 ortholog_one2one 1 retrogene
retro_pcap_91,
Pongo abelii ENSPPYG00000006128 possible_ortholog 1 retrogene
retro_pabe_3113,
Pan troglodytes ENSPTRG00000006704 possible_ortholog 1 retrogene
retro_ptro_2595,
Pteropus vampyrus ENSPVAG00000013925 possible_ortholog 1 retrogene
retro_pvam_360,
Rattus norvegicus ENSRNOG00000004827 ortholog_one2one 1 retrogene
retro_rnor_863,
Vicugna pacos ENSVPAG00000006464 possible_ortholog 1 retrogene
retro_vpac_378,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_37 85.85 87.01
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Download FASTA sequences of all ENSMUSG00000021111 retrocopies