RetrogeneDB ID:

retro_ogar_987

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873532.1:22380023..22381182(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PAPOLA
Ensembl ID:ENSOGAG00000004611
Aliases:None
Description:poly(A) polymerase alpha [Source:HGNC Symbol;Acc:14981]


Retrocopy-Parental alignment summary:






>retro_ogar_987
CAGACTTTGCTGAGTAAGGTAGAGTAGTCCAAACTTTTTGAAGCTCCAATCTTCTTTCAAAAGTACAAGGATTATATTGT
ACTTCTAGCAGGTGCACCGACAGAAAAACAACGTTTAGAGTGGGTGGGCTTGGTGGAATCAAAAATTTGAATCCTAATTG
GAAGCTTGGAAAAGAATGAATTTATTACATTGGCTCATGTCAATCCCCAGGCATTTCCGGCACCCAAAGAAAATCCTGAC
AAGAAAGAATTTTGCACAGTGTGGGTGATTTGGGTTAGTGTTTAAAAAAACAGAAAACTACAAAAACCTGAGTGTCAATC
TCCCCATGACATTCAGGCTTTCACAGACACAGTGTATAGGCAAAGCAAGAAACAGCAAGATGTTTGAGGTGGATATGAGA
ATTGCTGCAACGCATGTAAAAAGAAAGCAACTCCATCAACTACTACCTAAGCATGTGCTTTAGAAAAAGAAAAAGCATTC
AGCAGAAGGTGTCAGATTCACAGCTCTGAATGGCAGTAGGCTTGACTTGTCTGCGGACAGTGATAGCAGCGTGTCTGTGC
CTTCATCTACGAGTGCTATGAGGACCAGTCCCGGCAGCTCTCGGGGCAGAAACAGTCCTGCTCCAGCTGCAACAGCAGCA
TCTGTGACCAACACACAGGCTACCGAAGTTTCTGTGCCACAAGTAAATTCCAGTGAAAGCTCAGGGGTTACATCGAGGGA
AAGCGTTCCTCAAACTGCCACACAACCAGCCATTTCTCTACCACCAAAGCCTGTGGTCTCCAGAGTTGTTTGTTCAATGT
GTCTGGTAAATCCGCCACCTAGACCTTCAGAAAATGCAGCAACAAAAGTATCTAATCCTGTAGAGGGAGTCACGAGGACA
TCGCCACCTCATAAAGAAGCTAGTTCCAAGAAAACTAAAACAGAAGAGGACGAAACAAGTGAAGATGCTAACTGTCTTGC
TTTGAGTGGATGTGAAAAAACAGAAACAAAGGAACAACTTGATCCAGAGACAAGTACAGCTCATTCAGAAGCCATCCAGA
CAGCCGCTTCTCTGTTGGTGTCTCAGAAAACACCCAGTATGGACCTTTCTGATATCCCTGCTGTCCCCGCAAATCCTATT
CCTGTTATCAGGAATTCAATAAAACTGAGATTGAATCAG

ORF - retro_ogar_987 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 80.46 %
Parental protein coverage: 52.84 %
Number of stop codons detected: 3
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQ
..LLSK.E.SKLFEAP.FFQKYK.YIVLLA.APTEKQRLEWVGLVESKI.IL.GSLEKNEFITLAHVNPQ
RetrocopyQTLLSKVE*SKLFEAPIFFQKYKDYIVLLAGAPTEKQRLEWVGLVESKI*ILIGSLEKNEFITLAHVNPQ
ParentalSFPAPKENPDKEEFRTMWVI-GLVFKKTENSENLSVDLT-YDIQSFTDTVYRQ-AINSKMFEVDMKIAAM
.FPAPKENPDK.EF.T.WVI.GLVF........LSV.L...DIQ.FTDTVYRQ.A.NSKMFEVDM.IAA.
RetrocopyAFPAPKENPDKKEFCTVWVI>GLVFXXXXXXXXLSVNLP<HDIQAFTDTVYRQ>ARNSKMFEVDMRIAAT
ParentalHVKRKQLHQLLPNHVLQKKKKHSTEGVRLTALNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNSSGSSQGR
HVKRKQLHQLLP.HVL.KKKKHS.EGVR.TALN.S.LDLS.DSD.S.SVPS.TSAM.TSP....GSS.GR
RetrocopyHVKRKQLHQLLPKHVL*KKKKHSAEGVRFTALNGSRLDLSADSDSSVSVPSSTSAMRTSP----GSSRGR