RetrogeneDB ID: retro_mputfur_1375

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897102.1:2874623..2876612(+)
• Located in intron of: ENSMPUG00000016653

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PAPOLA
• Ensembl ID: ENSMPUG00000003054
• Aliases: None
• Description: poly(A) polymerase alpha [Source:HGNC Symbol;Acc:14981]

Sequence

>retro_mputfur_1375
ATGCCGTTTCCGGTGACAACCTCCGGATCACAACAGACACCGCCGCCGCCCAAGCGCTATGGCATCTCCTCCCCCATCAG
CTTAGCAGCCCCCAAGGAGACTGACTGCGTACTTACCCAGAAGTTAATTGAAACCCTGAAGCCCTTTGGGGTTTTTGAAG
AGGAAGAGGAACTGCAGCGCAGGATTTTAATTTTGGAAAAATTAAATAATCTGGTAAAGGAATGGATAAGAGAAATCAGT
GAAAGCAAGAGCCTTCCACAAGCTGTAATTGAAAATGTTGGAGGGAAAATCTTTACGTTTGGCTCTTACAGATTAGGAGT
ACACACGAAAGGCGCTGACATTGATGCGCTGTGCGTTGCGCCGAGACATGTTGATCGAAGTGACTTTTTCACCTCATTCT
ATGACAAATTGAAACTACACGAAGAAGTAAAAGATTTAAGGGCTGTTGAGGAGGCCTTTGTACCAGTTATTAAACTGTGT
TTTGATGGTATAGAGATTGATATTTTGTTTGCGAGGTTGGCACTGCAGACTATTCCAGAAGATTTGGACCTAAGAGATGA
CAGTCTGCTTAAAAACTTAGATATTAGATGCATAAGAAGCCTTAACGGTTGCCGGGTGACAGATGAAATTTTACATCTAG
TTCCAAACATTGACAACTTCAGGTTAACTCTCAGAGCCATCAAACTGTGGGCCAAATGCCACAATATCTATTCCAATATA
TTAGGATTCCTGGGAGGTGTTTCTTGGGCCATGCTAGTAGCGAGAACTTGCCAGCTCTACCCAAATGCAATAGCATCAAC
TCTTGTTCGTAAGTTTTTCTTGGTATTTTCAGAATGGGAATGGCCAAATCCAGTGCTACTGAAAGAGCCTGAAGAGCGGA
ATCTTAATTTGCCTGTATGGGACCCAAGAGTAAATCCCAGTGATAGGTACCATCTTATGCCCATAATCACACCAGCGTAC
CCACAGCAGAACTCCACATACAATGTGTCTGTTTCAACAAGGATGGTCATGATTGAGGAGTTTAAACAAGGGCTTGCTAT
CACACATGAAATTTTGCTGAGTAAGGCAGAGTGGTCTAAGCTTTTTGAAGCTCGAAGCTTCTTTCAAAAGTATAAGCATT
ATATTGTACTCCTAGCAAGTGCACCAACAGAAAAACAACATCTAGAATGGGTGGGCTTGGTGGAGTCAAAAATCCGAATC
CTGGTTGGAAGCTTGGAGAAGAATGAATTTATTACTCTGGCGCATGTGAATCCTCAGTCGTTTCCGGCACCTAAAGAAAA
TCCTGACAAGGAACAATTTCGTACAATGTGGGTGATTGGGTTAGTGTTAAAAAGGCCAGAAAACTCCGAGGTTCTCAGTA
TTGATCTCACCTATGATATCCAGTCTTTCACAGATACCGTTTATAGGCAAGCAATAAATAGCAAGATGTTTGAGATGGAT
ATGAAAATTGCTGCAATGCATTTAAGAAGAAAGGAACTTCATCAACTGCTGCCTAATCATGTGCTTCAGAAACGGAAAAC
CCATTCATCGGAAGGTGTCACTTTAACAGCTTTGAGTGACAGCAGCCTTGGCTTGTCTACAGACAGTGAAGACAGCATGT
CTGTGCCTTTACCTGCTGGCACTATGAAGACCGGCCCAGTGACTGGCAGCTCTCAGGGCAGAAACAGTCCTGCTCCTGCT
GTAATGGCAGCATCTGTGACCGCCGTACAAGTTACTGAAGTTTCCTTGCAACAAGGGACTCCAAGCGAAAGCTTAGGAGG
TGCGTCAAGCGAAAGCATTCCTCAGACTGCCTCACAGCCAGCCCTCCTTCCACTACCAAAGGCCACAGTTGCCAGAGTTG
TTTCTTCAACACGTCTGGTAAACCATCCACCCAGGCCTTCAGGGAGCACTGCGACAAACATAGCTAATCCTATCGTGGGC
GTCTAGTCGGCATTCTCACCTCATAAAGGACCAAGGAAACTAAAAGAAGAGGAACAGACTCATAAAGAG

Alignment

ORF - retro_mputfur_1375 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.11 %
• Parental protein coverage: 90.26 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPFPVTTQGSQQTQPPQKHYGITSPISLAAPKETDCLLTQKLIETLKPFGVFEEEEELQRRILILGKLNN
          MPFPVTT.GSQQT.PP.K.YGI.SPISLAAPKETDC.LTQKLIETLKPFGVFEEEEELQRRILIL.KLNN
Retrocopy MPFPVTTSGSQQTPPPPKRYGISSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQRRILILEKLNN

Parental  LVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKLQ
          LVKEWIREISESK.LPQ.VIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKL.
Retrocopy LVKEWIREISESKSLPQAVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKLH

Parental  EEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEI
          EEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEI
Retrocopy EEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEI

Parental  LHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWE
          LHLVPNIDNFRLTLRAIKLWAK.HNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLV.KFFLVFS.WE
Retrocopy LHLVPNIDNFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVRKFFLVFSEWE

Parental  WPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDE
          WPNPVLLK.PEE.NLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVM.EEFKQGLAIT.E
Retrocopy WPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMIEEFKQGLAITHE

Parental  ILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQS
          ILLSKAEWSKLFEA..FFQKYKHYIVLLASAPTEKQ.LEWVGLVESKIRILVGSLEKNEFITLAHVNPQS
Retrocopy ILLSKAEWSKLFEARSFFQKYKHYIVLLASAPTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQS

Parental  FPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKR
          FPAPKENPDKE.FRTMWVIGLV.K..ENSE.LS.DLTYDIQSFTDTVYRQAINSKMFE.DMKIAAMH..R
Retrocopy FPAPKENPDKEQFRTMWVIGLVLKRPENSEVLSIDLTYDIQSFTDTVYRQAINSKMFEMDMKIAAMHLRR

Parental  KQLHQLLPSHVLQKKKKHSTEGVRLTPLNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNSSGSSQGRNSPA
          K.LHQLLP.HVLQK.K.HS.EGV.LT.L.DSSL.LS.DS..SMSVP.P...MKT.P....GSSQGRNSPA
Retrocopy KELHQLLPNHVLQKRKTHSSEGVTLTALSDSSLGLSTDSEDSMSVPLPAGTMKTGPV--TGSSQGRNSPA

Parental  PAVTAASVTNIQATEVSVPQVNSSESSGGTSSESIPQTATQPAISPPPKPTVSRVVSSTRLVNPPPRPSG
          PAV.AASVT..Q.TEVS..Q...SES.GG.SSESIPQTA.QPA..P.PK.TV.RVVSSTRLVN.PPRPSG
Retrocopy PAVMAASVTAVQVTEVSLQQGTPSESLGGASSESIPQTASQPALLPLPKATVARVVSSTRLVNHPPRPSG

Parental  NAATKIPNPIVGVKRTSSPHKEESPKKTKTEEDETSE
          ..AT.I.NPIVGV....SPHK...P.K.K.EE....E
Retrocopy STATNIANPIVGV*SAFSPHK--GPRKLKEEEQTHKE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1375 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1375 was not experimentally validated.