Parental gene:

ENSFCAG00000026430

Aliases:None
Description:None
Organism:Cat (Felis catus)
Coordinates:A3:61445626..61453700(-)


>ENSFCAG00000026430
ATGGCTCCCGCAAAGAAGGGTGGCGAGAAGAAGAAGGGCCGTTCTGCCATCAACGAGGTAGTGACCAGAGAATACACCAT
CAACATTCACAAGCGCATCCATGGAGTGGGTTTCAAGAAGCGTGCCCCTCGGGCACTCAAAGAGATCCGGAAATTTGCTA
TGAAGGAGATGGGAACCCCAGATGTGCGCATCGACACCAGACTCAACAAAGCTGTCTGGGCCAAAGGAATAAGGAATGTT
CCATACCGTATCCGTGTGCGGCTGTCCAGAAAACGTAACGAGGATGAGGATTCACCAAACAAGCTCTATACGTTGGTTAC
CTATGTACCTGTCACCACTTTTAAAAATCTACAGACTGTTAATGTGGATGAGAACTAA

Library Parental gene expression (RPM)
SRP017611_liver 108 .77 RPM
SRP017611_kidney 155 .41 RPM
SRP017611_brain 57 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000007914 possible_ortholog 1 retrogene
retro_acar_168,
Dipodomys ordii ENSDORG00000015728 ortholog_one2one 3 retrogenes
retro_dord_164, retro_dord_515, retro_dord_770,
Latimeria chalumnae ENSLACG00000013603 ortholog_one2many 1 retrogene
retro_lcha_94,
Macropus eugenii ENSMEUG00000000963 ortholog_one2many 8 retrogenes
retro_meug_1083, retro_meug_1433, retro_meug_1731, retro_meug_1741, retro_meug_198, retro_meug_418, retro_meug_588, retro_meug_649,
Myotis lucifugus ENSMLUG00000002507 possible_ortholog 21 retrogenes
retro_mluc_1072, retro_mluc_1135, retro_mluc_1239, retro_mluc_1301, retro_mluc_1406, retro_mluc_1470, retro_mluc_1666, retro_mluc_1678, retro_mluc_1896, retro_mluc_1913, retro_mluc_2028, retro_mluc_2124, retro_mluc_2126, retro_mluc_269, retro_mluc_303, retro_mluc_463, retro_mluc_767, retro_mluc_782, retro_mluc_914, retro_mluc_922, retro_mluc_997,
Monodelphis domestica ENSMODG00000001704 possible_ortholog 5 retrogenes
retro_mdom_1052, retro_mdom_1464, retro_mdom_1674, retro_mdom_1720, retro_mdom_1818,
Otolemur garnettii ENSOGAG00000014494 possible_ortholog 10 retrogenes
retro_ogar_103, retro_ogar_143, retro_ogar_150, retro_ogar_178, retro_ogar_181, retro_ogar_186, retro_ogar_262, retro_ogar_271, retro_ogar_29, retro_ogar_3,
Procavia capensis ENSPCAG00000004787 ortholog_one2one 10 retrogenes
retro_pcap_121, retro_pcap_125, retro_pcap_152, retro_pcap_228, retro_pcap_230, retro_pcap_266, retro_pcap_33, retro_pcap_378, retro_pcap_401, retro_pcap_413,
Pongo abelii ENSPPYG00000025870 possible_ortholog 4 retrogenes
retro_pabe_106, retro_pabe_1635, retro_pabe_168, retro_pabe_895,
Rattus norvegicus ENSRNOG00000013508 ortholog_one2one 8 retrogenes
retro_rnor_101, retro_rnor_152, retro_rnor_1809, retro_rnor_217, retro_rnor_22, retro_rnor_267, retro_rnor_277, retro_rnor_286,
Sarcophilus harrisii ENSSHAG00000011706 possible_ortholog 3 retrogenes
retro_shar_190, retro_shar_285, retro_shar_721,
Sus scrofa ENSSSCG00000008170 possible_ortholog 4 retrogenes
retro_sscr_1072, retro_sscr_1073, retro_sscr_128, retro_sscr_263,
Sus scrofa ENSSSCG00000025180 possible_ortholog 6 retrogenes
retro_sscr_20, retro_sscr_34, retro_sscr_469, retro_sscr_501, retro_sscr_713, retro_sscr_81,
Tursiops truncatus ENSTTRG00000016447 ortholog_one2one 24 retrogenes
retro_ttru_1054, retro_ttru_1072, retro_ttru_1102, retro_ttru_1470, retro_ttru_1717, retro_ttru_215, retro_ttru_230, retro_ttru_262, retro_ttru_281, retro_ttru_316, retro_ttru_40, retro_ttru_482, retro_ttru_507, retro_ttru_527, retro_ttru_67, retro_ttru_671, retro_ttru_690, retro_ttru_785, retro_ttru_80, retro_ttru_804, retro_ttru_842, retro_ttru_886, retro_ttru_896, retro_ttru_99,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_17 73.73 94.40
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_fcat_46 93.60 100.00
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_fcat_148 83.78 87.20
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_fcat_190 65.14 85.60
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_fcat_251 68.75 100.00
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_fcat_466 77.17 100.00
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_fcat_658 83.65 83.20
Please wait, loading
Please wait, loading
Please wait, loading
8. retro_fcat_725 63.39 87.20
Please wait, loading
Please wait, loading
Please wait, loading
9. retro_fcat_803 71.00 79.20
Please wait, loading
Please wait, loading
Please wait, loading
10. retro_fcat_881 73.39 98.40
Please wait, loading
Please wait, loading
Please wait, loading
11. retro_fcat_1420 83.20 100.00
Please wait, loading
Please wait, loading
Please wait, loading
12. retro_fcat_1957 78.40 100.00
Please wait, loading
Please wait, loading
Please wait, loading
13. retro_fcat_2003 84.00 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSFCAG00000026430 retrocopies