RetrogeneDB ID:

retro_shar_190

Retrocopy
location
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL834595.1:545282..545582(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL31
Ensembl ID:ENSSHAG00000011706
Aliases:None
Description:ribosomal protein L31 [Source:HGNC Symbol;Acc:10334]


Retrocopy-Parental alignment summary:






>retro_shar_190
TCTATCATCCACTAGTTGGTAACATGGAAATATACCAACAGTATACAATTAAAATCTATGGAGTGAACTTCAAAAAGCAT
GCTCCTGGAAATTTAAAGTGAATCCATAATTGTACCATGAAAGAAATGGAAATGGAGATGTACTCATTGATTAAATACTT
AACAAAGTTGCTAGGCTCAAAGGAATAAGGAATATTCCATACTATATCTGAGAAGTATTTTTCCAGGAAATGGAATAGGG
ATAAAAATTCATCAAACAAAATTGTTTACAATGGTTACTTATGTATCAGTCACCACTTTT

ORF - retro_shar_190 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 53.85 %
Parental protein coverage: 80. %
Number of stop codons detected: 3
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalSAINEVVTREYTINIHKR-IHGVGFKKRAPRALKEIRKFAMKEM-GTPDVRIDTRLNKAVWAKGIRNVPY
S.I...VT..YT..I....I.GV.FKK.AP..LK.I....MKEM.G..DV.ID..LNK....KGIRN.PY
RetrocopySIIH*LVTWKYTNSIQLK<IYGVNFKKHAPGNLK*IHNCTMKEM<GNGDVLID*ILNKVARLKGIRNIPY
ParentalRI-RVRLSRKRNEDEDSPN-KLYTLVTYVPVTTF
.I.....SRK.N.D..S.N.KL.T.VTYV.VTTF
RetrocopyYI>EKYFSRKWNRDKNSSN>KLFTMVTYVSVTTF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Sarcophilus harrisii was not studied using RNA-Seq expression data.