RetrogeneDB ID:

retro_ogar_186

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873548.1:17943728..17944106(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000028859
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000014494
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_186
ATGGCTCCCGCAAAGAAGGGTGGCGAGAAGAAGAAGGGCCGGTCTGCCATCAACGAGGTGGTGACTCGAGAATACACTAT
CAATATTCACAAGCGCATCCATGGAGTGGGCTTCAAGAAGCGTGCCCCTCGAGCACTCAAAGAGATCCGGAAATTTGCCA
TGAAAGAGATGGGAACTCCAGATGTGCGCATTGATACCAGGCTTAACAAAGCTGTCTGGGCCAAAGGCATAAGGAATGTC
CCATACCGTATCCGTGTGCGGTTATCTAGGAAACGCAATGAAGATGAAGATTCACCAAACAAGCTCTATACTTTGGTTAC
CTATGTACCTGTTACCACTTTCAAAAATCTACAGACAGTCAACGTGGATGAGAACTAA

ORF - retro_ogar_186 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 100. %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK
MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK
RetrocopyMAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNK
ParentalAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN
AVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN
RetrocopyAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.