Parental gene:

FAM122B, ENSECAG00000018643

Aliases:None
Description:family with sequence similarity 122B [Source:HGNC Symbol;Acc:30490]
Organism:Horse (Equus caballus)
Coordinates:X:107155372..107175416(-)


>ENSECAG00000018643
ATGGCTCAGGAGAAAATGGAGCTGGACTTTGAGCCTGACACATCTGATGGGGCCACCCTGAGAAGATCCAACAGCGCTCC
CCTGATCCATGGGCTCAGTGACCTTTCACAGGTTTTTCAACCTTATACATTTAGAACTCGGAGGAATAGTACAACGATCA
TGAGCCGTCACAACTTGCTGCTGTCATCCTCACCTAATCGCGTTCCTAGCAGCAGACTACATCAGATCAAAAGGGAGGAA
GGCATGGATATGATGAACAGAGAAACTGCACACGAAAGGGAAGTGCAAACAGCAATGCAGATAAGCCAGTCATGGGATGA
GAGCTTGAGCCTGAGTGATAGTGATTTTGACAAGCCAGAGAAATTGTATTCTCCTAAAAGGATTGACTTCACTCCAGTGT
CTCCGGCGCCATCACCCACCAGAGGATTTGGAAAGCAATGTTTTTCACCATCCTTGCAAATGTTCGTGAGCAACAGTGAG
GCTGCCACCAAGGTCCCGGCAAGTGAGACCCGCCTTTGGAAAGAAGGGAGGAGTCAGAGTCCAGTCAAGTGCATTAGGCC
CAGTGTTCTTGGTCCTCTTAAAAGAAAAGGTGAAATGGAGACCGAAAGCCAGCCTAAGAGGCTCTTCCAAGGCACTACCA
ATATGCTGTCTCCGGAGGCTGCGCAGTTGTCTGATCTCAGTTCATGTTCAGATATTTTGGATGGCAGTAGTAGCAGCAGT
GGCTTATCCTCAGACTCACTGGCTAAAGGCAGCACAACCGCAGAGTCTCCAGTAGCATGCTCCAATTCATGCTCTCCGTT
CATCTTGATGGATGATCTCTCACCCAAGTGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 2 .99 RPM
SRP021940_embryo 8 .29 RPM
SRP021940_cerebellum 5 .19 RPM
SRP021940_testis 1 .28 RPM
SRP021940_placental_villous 54 .75 RPM
SRP021940_articular_cartilage 2 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001311 ortholog_one2one 1 retrogene
retro_amel_105,
Bos taurus ENSBTAG00000001886 ortholog_one2one 1 retrogene
retro_btau_103,
Canis familiaris ENSCAFG00000018882 ortholog_one2one 1 retrogene
retro_cfam_181,
Callithrix jacchus ENSCJAG00000004313 ortholog_one2one 1 retrogene
retro_cjac_594,
Cavia porcellus ENSCPOG00000011218 ortholog_one2one 1 retrogene
retro_cpor_80,
Felis catus ENSFCAG00000024842 ortholog_one2one 1 retrogene
retro_fcat_1575,
Myotis lucifugus ENSMLUG00000007988 ortholog_one2one 1 retrogene
retro_mluc_382,
Macaca mulatta ENSMMUG00000016948 ortholog_one2one 1 retrogene
retro_mmul_185,
Mustela putorius furo ENSMPUG00000012690 ortholog_one2one 1 retrogene
retro_mputfur_64,
Mus musculus ENSMUSG00000036022 ortholog_one2one 1 retrogene
retro_mmus_22,
Rattus norvegicus ENSRNOG00000050146 ortholog_one2many 1 retrogene
retro_rnor_651,
Sus scrofa ENSSSCG00000012685 ortholog_one2one 1 retrogene
retro_sscr_60,
Ictidomys tridecemlineatus ENSSTOG00000006261 ortholog_one2one 1 retrogene
retro_itri_61,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_91 65.91 94.93
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Download FASTA sequences of all ENSECAG00000018643 retrocopies