RetrogeneDB ID: retro_mluc_382

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430104:919463..920465(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000029695
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: FAM122B
• Ensembl ID: ENSMLUG00000007988
• Aliases: None
• Description: None

Sequence

>retro_mluc_382
ATGCGCAGACGACCGAGCCCGCTGACAGATTCTCGGTGGCGGCAGCAGTGGCGGCGGCGGCGGCGGCGCCTGCGGCGGTC
CTGGACTGCGGGGAATGGGAGCCTTAGCTCTCTGACTGAGCACCGCCCCGCCTCCCTGGCCTCCGACATGGCTCAGGAAA
AGATGGAGCTAGACCTGGAGCTGCCTCCGGGCACGGGCGGGAGCCCGGCGGAGGGCGGCGGCAGCGGCGGCGGCGGGGCC
CTCCGGAGGTCTAATAGCGCCCCTCTGATCCACGGCCTCAGTGACACTTCGCCGGTGTTCCAGGCCGAGGCGCCGAGCGC
CAGGCGCAACAGCACCACGTTCCCGAACCGCCATGGCCTGCTGCTCCCAGCCTCCCCGGTCCGCATGCACAGCAGCCGAT
TGCACCAGATCAAACAGGAGGAGGGCATGGACTTGATCAACCGAGAGACCGTCCACGAGCGCGAGGTGCAGAACGCCATG
CAGATCAGCCACTCCTGGGAGGAAAGTTTCAGCCTGAGTGACAACGACGTGGAGAAATCCGCCTCCCCGAAGCGCATCGA
TTTCATTCCGGTGTCACCGGCACCATCTCCCACCCGGGGAATCGGGAAGCAGTGCTTTTCACCATCCTTGCAAAGTTTTG
TGAGTAGCAATGGATTGCCTCCAAGCCCGATTCCCAGCCCAACGACCCGGTTTACGACTCGAAGAAGCCAGAGCCCCATT
AATTGCATTAGACCAAGTGTTCTTGGACCATTGAAAAGAAAATGTGAAATGGAGACTGATTATCCGCCAAAGAGATTTTT
CCAGGGCATGCTGTCTTCTGACGTCGCACAGCTGTCAGATCCGGGGGTGTGTGTGTCTTCGGACGCCCTGGATGGGAACA
GCAGCAGTACTGGATCTTCCTGTAACTCGCCAGCGAAAGTCAGCACTACCACCGACTCCCCGGTGTCACCTGCCCAGGCG
GCCTCTCCATTTATTCCAGTAGATGAACTTTCATCTAAGTGA

Alignment

ORF - retro_mluc_382 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.2 %
• Parental protein coverage: 84.68 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GTSNGGTLRRSSSAPLIQGLSDLSQGFQPYALRTRWNSTTSMSSHSLLLSSSSNGISSSRLHQIKKEEGT
          G...GG.LRRS.SAPLI.GLSD.S..FQ..A...R.NSTT....H.LLL..S.....SSRLHQIK.EEG.
Retrocopy GSGGGGALRRSNSAPLIHGLSDTSPVFQAEAPSARRNSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGM

Parental  DIMNRETAHEREVQAAMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGLGKQCFSPSL
          D..NRET.HEREVQ.AMQIS.SW.ES.SLSD.D....EK..SPKRIDF.PVSPAPSPTRG.GKQCFSPSL
Retrocopy DLINRETVHEREVQNAMQISHSWEESFSLSDNDV---EKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSL

Parental  Q-MSSSSGLPPSPTPSP--RHLSRRSQSPVKCIRPSALGPLKRKGEMESESQPKRLFQGTTNMLPPENAH
          Q...SS.GLPPSP.PSP..R...RRSQSP..CIRPS.LGPLKRK.EME....PKR.FQG...ML....A.
Retrocopy QSFVSSNGLPPSPIPSPTTRFTTRRSQSPINCIRPSVLGPLKRKCEMETDYPPKRFFQG---MLSSDVAQ

Parental  LSD
          LSD
Retrocopy LSD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_382 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 14 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000001311	1 retrocopy	retro_amel_105,
Bos taurus	ENSBTAG00000001886	1 retrocopy	retro_btau_103,
Canis familiaris	ENSCAFG00000018882	1 retrocopy	retro_cfam_181,
Callithrix jacchus	ENSCJAG00000004313	1 retrocopy	retro_cjac_594,
Cavia porcellus	ENSCPOG00000011218	1 retrocopy	retro_cpor_80,
Equus caballus	ENSECAG00000018643	1 retrocopy	retro_ecab_91,
Felis catus	ENSFCAG00000024842	1 retrocopy	retro_fcat_1575,
Myotis lucifugus	ENSMLUG00000007988	1 retrocopy	retro_mluc_382 ,
Macaca mulatta	ENSMMUG00000016948	1 retrocopy	retro_mmul_185,
Mustela putorius furo	ENSMPUG00000012690	1 retrocopy	retro_mputfur_64,
Mus musculus	ENSMUSG00000036022	1 retrocopy	retro_mmus_22,
Rattus norvegicus	ENSRNOG00000050146	1 retrocopy	retro_rnor_651,
Sus scrofa	ENSSSCG00000012685	1 retrocopy	retro_sscr_60,
Ictidomys tridecemlineatus	ENSSTOG00000006261	1 retrocopy	retro_itri_61,