Parental gene:

FAM122B, ENSCJAG00000004313

Aliases:None
Description:family with sequence similarity 122B [Source:HGNC Symbol;Acc:30490]
Organism:Marmoset (Callithrix jacchus)
Coordinates:X:122680354..122705041(-)


>ENSCJAG00000004313
CTGCCCGCTGTGCCTGCCTGCAAGTCTGACATGGCTCAGGAGAAAATGGAGCTGGACCTTGAGCTTAACACAGCTGATGG
GGGAACCCTGAGGAGATCCAGCAGTGCTCCCCTAATCCATGGACTCAGTGACCTTTCAGAGGTTTTTCAACCTTACACAA
GAACTCGGAGGAATAGTACAACGATTATGAGCAGTCACAGCTTGTTGCTGTCATCCTCACCTAATCGTATTCCTAGTAGC
AGATTGCATCAGATTAAAAGGGAAGAAGGTCTGGATATGATGAACAGAGAAACTGCACATGAAAGGGAAATACAATCGGC
GATGCAGATAAGCCAATCTTGGGATGAGAGCTTAAGCCTGAGTGACAGTGATTTTGACAAGCAGGAGAAATTATATTCTC
CTAAGAGAATTGACTTCACTCCAGTTTCTCCAGCACCTTCGCCCACCAGGGGATTTGGAAAGCAGTGCTTTTCCCCATCC
TTACAGATGTTTGTGAGCAGCAGTGGATTGCCACCAAGTCCAGTTCCCAGTACAAGACGATTTTCAAGCAGGAGAAGTCA
GAGTCCAGTCAAGTGCATTAGACCCAGCGCTCTTGGTCCTCTTAAAAGAAAAGGTGAAATGGAGACGGAAAGTCAGCCCA
AGAGACTCTTCCAAGGCACTACCAATATGCTATCTCCGGAGGCTGCGCAACTGTCTGATGATTCACCGAACTTTGTCTTC
AGTTCAGACATTTTGGATGGCAGTAGTAGCAGCAGTGGCTTATCCTCAGACCCGCTGGCTAAAGGCAGCGCTACCGCAGA
GTCTCCAGTAGCATGCTCCAATTCATGTTCTTCGTTCATCTTGATGGATGATCTCTCACCCAAGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 6 .49 RPM
SRP051959_skeletal_muscle 2 .84 RPM
SRP051959_lymph_node 7 .85 RPM
SRP051959_lung 6 .49 RPM
SRP051959_liver 3 .10 RPM
SRP051959_kidney 6 .01 RPM
SRP051959_heart 4 .37 RPM
SRP051959_colon 2 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001311 ortholog_one2one 1 retrogene
retro_amel_105,
Bos taurus ENSBTAG00000001886 ortholog_one2one 1 retrogene
retro_btau_103,
Canis familiaris ENSCAFG00000018882 ortholog_one2one 1 retrogene
retro_cfam_181,
Cavia porcellus ENSCPOG00000011218 ortholog_one2one 1 retrogene
retro_cpor_80,
Equus caballus ENSECAG00000018643 ortholog_one2one 1 retrogene
retro_ecab_91,
Felis catus ENSFCAG00000024842 ortholog_one2one 1 retrogene
retro_fcat_1575,
Myotis lucifugus ENSMLUG00000007988 ortholog_one2one 1 retrogene
retro_mluc_382,
Macaca mulatta ENSMMUG00000016948 ortholog_one2one 1 retrogene
retro_mmul_185,
Mustela putorius furo ENSMPUG00000012690 ortholog_one2one 1 retrogene
retro_mputfur_64,
Mus musculus ENSMUSG00000036022 ortholog_one2one 1 retrogene
retro_mmus_22,
Rattus norvegicus ENSRNOG00000050146 ortholog_one2many 1 retrogene
retro_rnor_651,
Sus scrofa ENSSSCG00000012685 ortholog_one2one 1 retrogene
retro_sscr_60,
Ictidomys tridecemlineatus ENSSTOG00000006261 ortholog_one2one 1 retrogene
retro_itri_61,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_594 68.20 89.93
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Download FASTA sequences of all ENSCJAG00000004313 retrocopies