Parental gene:

ENSCPOG00000003968

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_320:252553..254187(+)


>ENSCPOG00000003968
CAGGCGGAAGTGGAGCAGAAGAAGAAGCGAACCTTCCGCAAGTTTACCTACCGCGGCGTGGACCTTGACCAGCTACTGGA
CATGTCCTACGAGCAGCTGATGCAGCTCTACAGTGCTCGGCAGCGGCGGCGGCTGAACCGCGGACTGCGGCGCAAGCAGC
ACTCGCTGCTCAAGCGCCTGCGCAAGGCCAAGAAGGAGGCGCCGCCCATGGAGAAGCCCGAGGTGGTTAAGACGCACTTG
CGCGACATGATCATCCTGCCCGAGATGGTGGGCAGCATGGTGGGCGTCTACAACGGCAAGACCTTCAACCAGGTGGAGAT
CAAGCCCGAGATGATCGGCCACTACCTGGGCGAGTTCTCCATCACCTACAAGCCGGTGAAGCACGGCCGGCCTGGCATCG
GGGCCACCCACTCCTCACGCTTCATCCCCCTGAAGTAG

Library Parental gene expression (RPM)
SRP017611_liver 68 .12 RPM
SRP017611_kidney 121 .96 RPM
SRP017611_brain 67 .87 RPM
SRP040447_lung 197 .73 RPM
SRP040447_skeletal_muscle 189 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019718 possible_ortholog 1 retrogene
retro_btau_1856,
Callithrix jacchus ENSCJAG00000005632 possible_ortholog 13 retrogenes
retro_cjac_143, retro_cjac_151, retro_cjac_1517, retro_cjac_1607, retro_cjac_1672, retro_cjac_1714, retro_cjac_2069, retro_cjac_2236, retro_cjac_2596, retro_cjac_2656, retro_cjac_48, retro_cjac_756, retro_cjac_86,
Dasypus novemcinctus ENSDNOG00000000706 possible_ortholog 2 retrogenes
retro_dnov_173, retro_dnov_85,
Echinops telfairi ENSETEG00000008645 possible_ortholog 1 retrogene
retro_etel_2,
Felis catus ENSFCAG00000010769 possible_ortholog 1 retrogene
retro_fcat_1570,
Homo sapiens ENSG00000115268 possible_ortholog 4 retrogenes
retro_hsap_1484, retro_hsap_2341, retro_hsap_2650, retro_hsap_530,
Gorilla gorilla ENSGGOG00000002818 possible_ortholog 4 retrogenes
retro_ggor_1136, retro_ggor_116, retro_ggor_141, retro_ggor_1851,
Monodelphis domestica ENSMODG00000005119 possible_ortholog 1 retrogene
retro_mdom_1335,
Mus musculus ENSMUSG00000063457 possible_ortholog 8 retrogenes
retro_mmus_1270, retro_mmus_208, retro_mmus_2734, retro_mmus_2786, retro_mmus_3166, retro_mmus_3642, retro_mmus_520, retro_mmus_917,
Nomascus leucogenys ENSNLEG00000001651 possible_ortholog 8 retrogenes
retro_nleu_105, retro_nleu_1858, retro_nleu_1922, retro_nleu_2390, retro_nleu_2465, retro_nleu_2559, retro_nleu_461, retro_nleu_544,
Otolemur garnettii ENSOGAG00000015776 ortholog_one2one 4 retrogenes
retro_ogar_194, retro_ogar_210, retro_ogar_2237, retro_ogar_96,
Pongo abelii ENSPPYG00000009317 possible_ortholog 4 retrogenes
retro_pabe_1233, retro_pabe_2321, retro_pabe_67, retro_pabe_893,
Pan troglodytes ENSPTRG00000010200 possible_ortholog 1 retrogene
retro_ptro_122,
Pteropus vampyrus ENSPVAG00000003168 possible_ortholog 2 retrogenes
retro_pvam_382, retro_pvam_926,
Rattus norvegicus ENSRNOG00000024603 possible_ortholog 8 retrogenes
retro_rnor_1384, retro_rnor_1711, retro_rnor_1712, retro_rnor_178, retro_rnor_2086, retro_rnor_2114, retro_rnor_2642, retro_rnor_700,
Sarcophilus harrisii ENSSHAG00000013424 possible_ortholog 1 retrogene
retro_shar_632,
Sus scrofa ENSSSCG00000023248 possible_ortholog 1 retrogene
retro_sscr_271,
Ictidomys tridecemlineatus ENSSTOG00000006423 possible_ortholog 2 retrogenes
retro_itri_722, retro_itri_939,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_495 70.15 88.97
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Download FASTA sequences of all ENSCPOG00000003968 retrocopies