RetrogeneDB - Parental gene ENSCPOG00000002336 details

							
>ENSCPOG00000002336
ATGCCCAAGAGGAAGGTGAGCACGGCCGCGGCGCGCACGGCCCCAGCGCCCAAGAGGAGATCGGCGAGATTGTCTGCTAA

ACCTGCTCCTGCAAAAGTGGAAACGAAGCCAAAAAAGGCAGCGGGAAAGGATAAATCTGTGGACAAAAAAGTGCAACCAA

AAGGGAAGAGGGGAGCGAAGGGAAAACAGGCTGAGGCGGCTCACCAGGAGGCCAAGGAGGATCTCCCTGCGGAGAACGGA

GAGGCGAAGAACGCAGAGAGTGCAGCCTCTGATGAAGCAGAAGAGAAAGAAGCCAAGTCTGAT

Library	Parental gene expression (RPM)
SRP017611_liver	23 .72 RPM
SRP017611_kidney	83 .33 RPM
SRP017611_brain	31 .40 RPM
SRP040447_lung	86 .23 RPM
SRP040447_skeletal_muscle	18 .93 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000014100	possible_ortholog	11 retrogenes	retro_amel_1103, retro_amel_1157, retro_amel_1307, retro_amel_1378, retro_amel_1580, retro_amel_1839, retro_amel_349, retro_amel_352, retro_amel_408, retro_amel_439, retro_amel_670,
Bos taurus	ENSBTAG00000018768	possible_ortholog	12 retrogenes	retro_btau_1178, retro_btau_1475, retro_btau_1560, retro_btau_1746, retro_btau_1801, retro_btau_388, retro_btau_504, retro_btau_572, retro_btau_607, retro_btau_617, retro_btau_897, retro_btau_928,
Canis familiaris	ENSCAFG00000010045	possible_ortholog	12 retrogenes	retro_cfam_1056, retro_cfam_1233, retro_cfam_1318, retro_cfam_1392, retro_cfam_1522, retro_cfam_1667, retro_cfam_1904, retro_cfam_2202, retro_cfam_292, retro_cfam_404, retro_cfam_634, retro_cfam_649,
Equus caballus	ENSECAG00000019029	possible_ortholog	5 retrogenes	retro_ecab_1130, retro_ecab_285, retro_ecab_362, retro_ecab_800, retro_ecab_848,
Homo sapiens	ENSG00000205581	possible_ortholog	7 retrogenes	retro_hsap_1097, retro_hsap_1418, retro_hsap_1581, retro_hsap_1758, retro_hsap_1874, retro_hsap_3370, retro_hsap_762,
Monodelphis domestica	ENSMODG00000020972	ortholog_many2many	5 retrogenes	retro_mdom_1085, retro_mdom_109, retro_mdom_284, retro_mdom_755, retro_mdom_88,
Mustela putorius furo	ENSMPUG00000008550	possible_ortholog	3 retrogenes	retro_mputfur_252, retro_mputfur_371, retro_mputfur_483,
Mus musculus	ENSMUSG00000040681	possible_ortholog	13 retrogenes	retro_mmus_1274, retro_mmus_1295, retro_mmus_1445, retro_mmus_1565, retro_mmus_1574, retro_mmus_1636, retro_mmus_2166, retro_mmus_2195, retro_mmus_2895, retro_mmus_3117, retro_mmus_3641, retro_mmus_832, retro_mmus_949,
Otolemur garnettii	ENSOGAG00000010329	possible_ortholog	35 retrogenes	retro_ogar_1062, retro_ogar_1186, retro_ogar_1245, retro_ogar_1304, retro_ogar_1355, retro_ogar_1437, retro_ogar_1527, retro_ogar_1529, retro_ogar_175, retro_ogar_1812, retro_ogar_1901, retro_ogar_1932, retro_ogar_2057, retro_ogar_2311, retro_ogar_2325, retro_ogar_2522, retro_ogar_2523, retro_ogar_266, retro_ogar_2712, retro_ogar_2729, retro_ogar_278, retro_ogar_2913, retro_ogar_2964, retro_ogar_3095, retro_ogar_3133, retro_ogar_3138, retro_ogar_3155, retro_ogar_333, retro_ogar_3354, retro_ogar_370, retro_ogar_393, retro_ogar_657, retro_ogar_699, retro_ogar_723, retro_ogar_958,
Pongo abelii	ENSPPYG00000011426	possible_ortholog	25 retrogenes	retro_pabe_1066, retro_pabe_1149, retro_pabe_1172, retro_pabe_1190, retro_pabe_123, retro_pabe_1264, retro_pabe_1302, retro_pabe_1504, retro_pabe_1604, retro_pabe_1842, retro_pabe_2152, retro_pabe_2211, retro_pabe_2284, retro_pabe_2380, retro_pabe_251, retro_pabe_2518, retro_pabe_2771, retro_pabe_3086, retro_pabe_3648, retro_pabe_3825, retro_pabe_504, retro_pabe_698, retro_pabe_699, retro_pabe_702, retro_pabe_760,
Pan troglodytes	ENSPTRG00000031426	possible_ortholog	22 retrogenes	retro_ptro_1256, retro_ptro_1299, retro_ptro_1301, retro_ptro_1454, retro_ptro_1556, retro_ptro_1740, retro_ptro_1821, retro_ptro_1830, retro_ptro_2058, retro_ptro_2290, retro_ptro_2559, retro_ptro_2716, retro_ptro_3119, retro_ptro_3278, retro_ptro_363, retro_ptro_463, retro_ptro_586, retro_ptro_61, retro_ptro_637, retro_ptro_696, retro_ptro_970, retro_ptro_980,
Rattus norvegicus	ENSRNOG00000048226	possible_ortholog	8 retrogenes	retro_rnor_1020, retro_rnor_1239, retro_rnor_1290, retro_rnor_2643, retro_rnor_2667, retro_rnor_642, retro_rnor_764, retro_rnor_966,
Rattus norvegicus	ENSRNOG00000050978	possible_ortholog	5 retrogenes	retro_rnor_1057, retro_rnor_1318, retro_rnor_1389, retro_rnor_2433, retro_rnor_358,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cpor_4	59.18	97.03	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cpor_334	55.56	53.47	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cpor_349	61.54	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cpor_884	59.72	71.29	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cpor_949	58.21	66.34	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cpor_1129	69.05	82.18	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cpor_1389	69.14	77.23	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCPOG00000002336 retrocopies

Parental gene:	ENSCPOG00000002336
Aliases:	None
Description:	None
Organism:	*Guinea Pig (Cavia porcellus)*
Coordinates:	scaffold_90:3691365..3697389(+)

Parental gene:

ENSCPOG00000002336