Parental gene:

Hmgn1, ENSRNOG00000050978

Aliases:None
Description:high-mobility group nucleosome binding domain 1 [Source:RefSeq peptide;Acc:NP_001013202]
Organism:Rat (Rattus norvegicus)
Coordinates:11:40004657..40010576(-)


>ENSRNOG00000050978
ATGCCCAAGAGGAAGGTTAGCGCAGATGGAGCGGCGAAGGCGGAGCCCAAGCGCCGCTCCGCGAGGCTGTCGGCCAAGCC
CGCCCCTGCCAAGGTGGACGCGAAACCGAAAAAGGCCGCGGGAAAGGATAAAGCATCAGACAAAAAAGCACAGATAAAAG
GGAAGAGGGGAGCGAAGGGCAAACAGGCTGAAGTGGCTGACCAGCAAACTACAGATCTGCCTGCAGAAAATGGAGAGACG
GAAAACCAGAGTCCAGCCTCTGAGGAAGAGAAAGAAGCGAAGTCTGATTAA

Library Parental gene expression (RPM)
SRP017611_liver 0 .00 RPM
SRP017611_kidney 0 .00 RPM
SRP017611_brain 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000002336 possible_ortholog 7 retrogenes
retro_cpor_1129, retro_cpor_1389, retro_cpor_334, retro_cpor_349, retro_cpor_4, retro_cpor_884, retro_cpor_949,
Monodelphis domestica ENSMODG00000020972 ortholog_many2many 5 retrogenes
retro_mdom_1085, retro_mdom_109, retro_mdom_284, retro_mdom_755, retro_mdom_88,
Mustela putorius furo ENSMPUG00000008550 possible_ortholog 3 retrogenes
retro_mputfur_252, retro_mputfur_371, retro_mputfur_483,
Mus musculus ENSMUSG00000040681 ortholog_one2many 13 retrogenes
retro_mmus_1274, retro_mmus_1295, retro_mmus_1445, retro_mmus_1565, retro_mmus_1574, retro_mmus_1636, retro_mmus_2166, retro_mmus_2195, retro_mmus_2895, retro_mmus_3117, retro_mmus_3641, retro_mmus_832, retro_mmus_949,
Rattus norvegicus ENSRNOG00000048226 within_species_paralog 8 retrogenes
retro_rnor_1020, retro_rnor_1239, retro_rnor_1290, retro_rnor_2643, retro_rnor_2667, retro_rnor_642, retro_rnor_764, retro_rnor_966,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_358 87.50 100.00
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2. retro_rnor_1057 78.67 75.00
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3. retro_rnor_1318 67.61 72.92
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4. retro_rnor_1389 50.62 81.25
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5. retro_rnor_2433 89.69 100.00
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Download FASTA sequences of all ENSRNOG00000050978 retrocopies