Parental gene: | ENSCJAG00000015226 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 4:35118299..35129643(+) |
>ENSCJAG00000015226
ATGAGCGAATCGAGCTCGAAGTCCAGCCAGCCCTTGGCCTCCAAGCAGGAAAAGGATGGCACTGAGAAGCGTGGCCGGGG
CAGGCCACGCAAGCAGCCTCCGGTGAGTCCCGGGACAGCGCTGGTAGGGAGTCAGAAGGAGCCCAGCGAAGTGCCAACAC
CTAAGAGACCTCGGGGCCGACCAAAGGGAAGCAAAAACAAGGGAGAAGGAGGAAGAGGAGGGCATCTCGCAGGAGTCCTC
GGAGGAGGAGCAGTGACCGTGTGCCGCCTGCTCCTCACTGGAGCAGCTTCCTTCTGGGACTGGACAGCTTTGCTCCGCTC
CCACCGCCCCTTCCCCAGGCCCACCATCACCACCACCGCCGGCCACCACCCCCATCTTCCACCTGTGCCCTCACCACCAC
ACTACACAGCACACCAGCCGCTGCAGGGCCCCCATGGGCTGAGTGGGGAGCAGTTTCCCGGCCTCAGTTCCCAGCTCCCC
CCCACCCATGCACACACACATGCCCTCCTGGACAAGGCTAACATCCCAATTAGCCGCACCCTGCACCTGCTGCATCCCCA
CTCCCTTGGTGATGGGGACATTGCTCTCTGGGCTTTTGGTTTGGGGGCGCCCTCTCTGCTCCTCTACTGTTCCCTCTGGC
TTCCCATAGTGGGGCCTGGGAGGGTTCCCCTGGCCTTAAAAGGGGCCCAAGCCCCATCTCATCCTGGCACACCCTACTTC
ACTGCCCTGGCAGCAGCAGGTGTGGCCAGTGGAGGGGGGTGCTGGCCCCCAAAGTTCCCCCAGCCAAACTGTCTTTGTCA
CCACATAGGGCTCACACCTTCCTTCCCCACCTCCCTAGTCCCTCCACTAGGTTGGACAGCCCCCTGTGGCTGCAGGAAGG
CAGGAGGGGTAAGTCCCCTACAACCTTTTCACTGTGGTCCCAGTCCCCTGGCCCTCCGCCTGGGATCTGAGTATGTATTG
TGGTGA
ATGAGCGAATCGAGCTCGAAGTCCAGCCAGCCCTTGGCCTCCAAGCAGGAAAAGGATGGCACTGAGAAGCGTGGCCGGGG
CAGGCCACGCAAGCAGCCTCCGGTGAGTCCCGGGACAGCGCTGGTAGGGAGTCAGAAGGAGCCCAGCGAAGTGCCAACAC
CTAAGAGACCTCGGGGCCGACCAAAGGGAAGCAAAAACAAGGGAGAAGGAGGAAGAGGAGGGCATCTCGCAGGAGTCCTC
GGAGGAGGAGCAGTGACCGTGTGCCGCCTGCTCCTCACTGGAGCAGCTTCCTTCTGGGACTGGACAGCTTTGCTCCGCTC
CCACCGCCCCTTCCCCAGGCCCACCATCACCACCACCGCCGGCCACCACCCCCATCTTCCACCTGTGCCCTCACCACCAC
ACTACACAGCACACCAGCCGCTGCAGGGCCCCCATGGGCTGAGTGGGGAGCAGTTTCCCGGCCTCAGTTCCCAGCTCCCC
CCCACCCATGCACACACACATGCCCTCCTGGACAAGGCTAACATCCCAATTAGCCGCACCCTGCACCTGCTGCATCCCCA
CTCCCTTGGTGATGGGGACATTGCTCTCTGGGCTTTTGGTTTGGGGGCGCCCTCTCTGCTCCTCTACTGTTCCCTCTGGC
TTCCCATAGTGGGGCCTGGGAGGGTTCCCCTGGCCTTAAAAGGGGCCCAAGCCCCATCTCATCCTGGCACACCCTACTTC
ACTGCCCTGGCAGCAGCAGGTGTGGCCAGTGGAGGGGGGTGCTGGCCCCCAAAGTTCCCCCAGCCAAACTGTCTTTGTCA
CCACATAGGGCTCACACCTTCCTTCCCCACCTCCCTAGTCCCTCCACTAGGTTGGACAGCCCCCTGTGGCTGCAGGAAGG
CAGGAGGGGTAAGTCCCCTACAACCTTTTCACTGTGGTCCCAGTCCCCTGGCCCTCCGCCTGGGATCTGAGTATGTATTG
TGGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 2 .54 RPM |
| SRP051959_skeletal_muscle | 2 .73 RPM |
| SRP051959_lymph_node | 5 .48 RPM |
| SRP051959_lung | 2 .67 RPM |
| SRP051959_liver | 0 .39 RPM |
| SRP051959_kidney | 1 .31 RPM |
| SRP051959_heart | 1 .18 RPM |
| SRP051959_colon | 8 .63 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000001061 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000137309 | possible_ortholog | 4 retrogenes | |
| Myotis lucifugus | ENSMLUG00000010085 | possible_ortholog | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000019529 | possible_ortholog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000046711 | ortholog_many2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000008303 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000016076 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000029838 | ortholog_one2many | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000040884 | possible_ortholog | 6 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000014283 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000000488 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1197 | 75.70 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3158 | 97.20 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000015226 retrocopies