Parental gene: | CHTOP, ENSCJAG00000010383 |
| Aliases: | None |
| Description: | chromatin target of PRMT1 [Source:HGNC Symbol;Acc:24511] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 18:7557492..7571900(+) |
>ENSCJAG00000010383
ATGGCTGCACAGTCAGCGCCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCTAAATGAGCGCTTCACTAATATGCT
GAAGAACAAACAGCCGACGCCAGTGAATATTCGGGCTTCGATGCAGCAACAACAGCAGCTAGCCAGTGCCAGAAACAGAA
GACTGGCCCAGCAGATGGAGAATAGACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGAAGAGCTTAAAGCAGCGCCTG
GGTAAGAGTAACATCCAGGCACGGTTAGGCCGACCCATAGGGGCCCTGGCCAGGGGAGCAATCGGAGGACGAGGCCTACC
CATAATCCAGAGAGGCTTGCCCAGAGGAGGACTACGTGGGGGACGTGCCACCAGAACCCTGCTTAGGGGCGGGATGTCGC
TCCGAGGTCAAAACCTGCTCCGAGGTGGACGAGCCGTAGCTCCCCGAATGGGCTTAAGAAGAGGTGGTGTTCGAGGTCGT
GGAGGTCCTGGGAGAGGGGGCCTAGGGCGTGGAGCTATGGGTCGTGGCGGAATCGGTGGTAGAGGTCGGGGTATGATAGG
TCGGGGAAAAGGGGGCTTTGGAGGCCGAGGCCGAGGCCGTGGACGAGGGAGAGGTGCCCTTGCTCGCCCTGTATTGACCA
AGGAGCAGCTGGACAACCAATTGAGCACATGTAAAACAAAAGGACACCTGGATGCTGAGTTGGATGCCTACATGGCGCAG
ACAGATCCCGAAACCAATGATTGA
ATGGCTGCACAGTCAGCGCCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCTAAATGAGCGCTTCACTAATATGCT
GAAGAACAAACAGCCGACGCCAGTGAATATTCGGGCTTCGATGCAGCAACAACAGCAGCTAGCCAGTGCCAGAAACAGAA
GACTGGCCCAGCAGATGGAGAATAGACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGAAGAGCTTAAAGCAGCGCCTG
GGTAAGAGTAACATCCAGGCACGGTTAGGCCGACCCATAGGGGCCCTGGCCAGGGGAGCAATCGGAGGACGAGGCCTACC
CATAATCCAGAGAGGCTTGCCCAGAGGAGGACTACGTGGGGGACGTGCCACCAGAACCCTGCTTAGGGGCGGGATGTCGC
TCCGAGGTCAAAACCTGCTCCGAGGTGGACGAGCCGTAGCTCCCCGAATGGGCTTAAGAAGAGGTGGTGTTCGAGGTCGT
GGAGGTCCTGGGAGAGGGGGCCTAGGGCGTGGAGCTATGGGTCGTGGCGGAATCGGTGGTAGAGGTCGGGGTATGATAGG
TCGGGGAAAAGGGGGCTTTGGAGGCCGAGGCCGAGGCCGTGGACGAGGGAGAGGTGCCCTTGCTCGCCCTGTATTGACCA
AGGAGCAGCTGGACAACCAATTGAGCACATGTAAAACAAAAGGACACCTGGATGCTGAGTTGGATGCCTACATGGCGCAG
ACAGATCCCGAAACCAATGATTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 27 .33 RPM |
| SRP051959_skeletal_muscle | 26 .38 RPM |
| SRP051959_lymph_node | 33 .93 RPM |
| SRP051959_lung | 29 .33 RPM |
| SRP051959_liver | 15 .77 RPM |
| SRP051959_kidney | 25 .45 RPM |
| SRP051959_heart | 24 .05 RPM |
| SRP051959_colon | 20 .21 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000013518 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000002740 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000016098 | ortholog_one2many | 2 retrogenes | |
| Mus musculus | ENSMUSG00000001017 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000012760 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000000660 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000012442 | ortholog_one2one | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000010259 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_423 | 91.63 | 91.09 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_431 | 84.31 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2059 | 88.46 | 73.68 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000010383 retrocopies