Parental gene: | ISCA1, ENSCJAG00000001940 |
| Aliases: | None |
| Description: | iron-sulfur cluster assembly 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28660] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 1:101123978..101136580(+) |
>ENSCJAG00000001940
ATGGTGGCGGTGGAGGGCGGGGATAAGCCTGAGGGCGCCGTGCGCCGAAGCTTGTGGCGTCAATGCGCCCGCCTTGTCCA
TGGAGAGAGGCTGGGGCTGCCGAGCTTCGGCCCAAGGCACCAGGGCGCCGAGACGGCAAAGATGTCGGCTTCCTTAGTCC
GGGCAACTGTCCGGGCTGTGAGCAAGAGGAAGCTGCAGCCCACCCGGGCCGCGCTCACCCTGACACCTGCAGCAGTAAAC
AAGATAAAGCAGCTTCTCAAAGATAAACCTGAGCATGTAGGTGTAAAAGTTGGTGTCCGAACCAGGGGCTGTAATGGCCT
TTCTTATACTCTAGAATATACAAAGACAAAAGGAGATTCTGATGAAGAAGTTATTCAAGATGGAGTCAGAGTATTCATCG
AAAAGAAAGCACAGCTAACACTTTTAGGAACAGAAATGGACTATGTTGAAGACAAATTATCCAGTGAGTTTGTGTTCAAT
AACCCAAACATCAAAGGAACTTGTGGCTGTGGAGAAAGCTTTAATATTTGA
ATGGTGGCGGTGGAGGGCGGGGATAAGCCTGAGGGCGCCGTGCGCCGAAGCTTGTGGCGTCAATGCGCCCGCCTTGTCCA
TGGAGAGAGGCTGGGGCTGCCGAGCTTCGGCCCAAGGCACCAGGGCGCCGAGACGGCAAAGATGTCGGCTTCCTTAGTCC
GGGCAACTGTCCGGGCTGTGAGCAAGAGGAAGCTGCAGCCCACCCGGGCCGCGCTCACCCTGACACCTGCAGCAGTAAAC
AAGATAAAGCAGCTTCTCAAAGATAAACCTGAGCATGTAGGTGTAAAAGTTGGTGTCCGAACCAGGGGCTGTAATGGCCT
TTCTTATACTCTAGAATATACAAAGACAAAAGGAGATTCTGATGAAGAAGTTATTCAAGATGGAGTCAGAGTATTCATCG
AAAAGAAAGCACAGCTAACACTTTTAGGAACAGAAATGGACTATGTTGAAGACAAATTATCCAGTGAGTTTGTGTTCAAT
AACCCAAACATCAAAGGAACTTGTGGCTGTGGAGAAAGCTTTAATATTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 35 .00 RPM |
| SRP051959_skeletal_muscle | 32 .41 RPM |
| SRP051959_lymph_node | 10 .39 RPM |
| SRP051959_lung | 12 .44 RPM |
| SRP051959_liver | 18 .78 RPM |
| SRP051959_kidney | 21 .76 RPM |
| SRP051959_heart | 22 .63 RPM |
| SRP051959_colon | 9 .03 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000046526 | possible_ortholog | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000001336 | possible_ortholog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000011872 | possible_ortholog | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000010652 | possible_ortholog | 5 retrogenes | |
| Equus caballus | ENSECAG00000011465 | possible_ortholog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000016537 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000135070 | ortholog_one2one | 6 retrogenes | |
| Gorilla gorilla | ENSGGOG00000007518 | ortholog_one2many | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000003889 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000001288 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000003399 | ortholog_one2one | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000003559 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000044792 | ortholog_many2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000010945 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000015628 | possible_ortholog | 5 retrogenes | |
| Pongo abelii | ENSPPYG00000019339 | ortholog_one2one | 5 retrogenes | |
| Pan troglodytes | ENSPTRG00000021075 | ortholog_one2one | 7 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000004588 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000018343 | ortholog_one2many | 4 retrogenes | |
| Sus scrofa | ENSSSCG00000010953 | possible_ortholog | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000012826 | possible_ortholog | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000004231 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_350 | 73.81 | 71.59 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_672 | 64.50 | 94.32 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1623 | 91.33 | 85.23 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_1734 | 80.74 | 75.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_1870 | 87.34 | 88.64 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_2608 | 85.71 | 79.55 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000001940 retrocopies