RetrogeneDB ID:

retro_etel_1857

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_308387:43264..43648(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSETEG00000016537
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_etel_1857
ATGTTGGCTTCTTTAGTCCAAGCCACTGTCTGGGCTGTGAACAAGAGGAAACCACAGGCCACCTGGGTCGCCCTCACCCT
GACACCGTCAGCAGTACATAAGATTACACAGCTTCTTAAAGAGAAGCCTGAAGGGTGTAGGTTTGAAATTTGGTGTTTGA
ATCGGGGCTCCCAATGGCCTTTCTTATACTTTAGACTATCCAAAGATGGAGATTCTGTTGAAGAAGTTGTTCAAGATGGT
GGCACAGTGGTCATTGAAAAGAAAGCAGAGACAACCCTGTTAGGAACAGAAACGGACCATGTAAAAGACAAATTATCCAG
TGATCATGTGTTCAATAACCCAAACATCAAAGGAATATGTGGCTGTGGAGAGAACTTTAGGATC

ORF - retro_etel_1857 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.18 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMSASLVRATVRAVSKRKLQATRAALTLTPSAVHKIKQLLKDKPEH-VGLKVGVRTRGCNGLSYTLEYTKT
M.ASLV.ATV.AV.KRK.QAT..ALTLTPSAVHKI.QLLK.KPE..VGLK.GV.....NGLSYTL.Y.K.
RetrocopyMLASLVQATVWAVNKRKPQATWVALTLTPSAVHKITQLLKEKPEG>VGLKFGV*IGAPNGLSYTLDYPKM
ParentalK-GDSDEEVVQDGVKVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFNI
......E.V...G..V.IEKKA..TLLGTE.D.V.DKLSS..VFNNPNIKG.CGCGE.F.I
RetrocopyE<DSVEEVVQDGGT-VVIEKKAETTLLGTETDHVKDKLSSDHVFNNPNIKGICGCGENFRI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Echinops telfairi was not studied using RNA-Seq expression data.