Parental gene:

ISCA1, ENSSSCG00000010953

Aliases:None
Description:iron-sulfur cluster assembly 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28660]
Organism:Pig (Sus scrofa)
Coordinates:10:33108927..33123610(+)


>ENSSSCG00000010953
GCGCAGGGCGGGGCCTCGGCCACCGTGCGCCGGAGCCTGTGGCGTCAATGCGCCAGCCGTGTCCATGGAGAGAGGCTGAG
GTGGCCGAGCTCCGGCCCATACCGGGTCGCCGGGACGGCGAAGATGTCCGCTTCGTTAGTCCGGGCCACTGTCCGGGCTG
TGAGCAAGAGGAAGCTGCAGCCCACCCGGGCCGCCCTCACCCTGACACCTTCAGCAGTAAACAAGATAAAACAACTTCTT
AAAGATAAGCCTGAACACGTAGGTGTGAAAGTTGGTGTCCGAACCAGGGGTTGTAATGGCCTTTCCTACACTCTAGAATA
TACAAAGACAAAAGGAGACTCTGATGAAGAAGTTGTTCAAGATGGAGTCAGAGTGTTCATCGAGAAGAAAGCACAGCTAA
CACTTTTAGGAACAGAAATGGACTATGTTGAAGACAAATTATCCAGCGAGTTTGTGTTCAATAACCCAAACATCAAAGGG
ACATGTGGCTGTGGAGAAAGCTTTAACATCTGA

Library Parental gene expression (RPM)
SRP014902_placenta 19 .64 RPM
SRP014902_testis 37 .77 RPM
SRP018856_adipose 35 .79 RPM
SRP018288_kidney 54 .28 RPM
SRP018288_lung 34 .72 RPM
SRP018288_liver 43 .18 RPM
SRP018288_heart 153 .55 RPM
SRP035408_liver 34 .70 RPM
SRP035408_brain 39 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000046526 ortholog_one2one 2 retrogenes
retro_btau_1787, retro_btau_506,
Canis familiaris ENSCAFG00000001336 ortholog_one2one 1 retrogene
retro_cfam_1087,
Callithrix jacchus ENSCJAG00000001940 possible_ortholog 6 retrogenes
retro_cjac_1623, retro_cjac_1734, retro_cjac_1870, retro_cjac_2608, retro_cjac_350, retro_cjac_672,
Dasypus novemcinctus ENSDNOG00000010652 ortholog_one2one 5 retrogenes
retro_dnov_1162, retro_dnov_142, retro_dnov_1956, retro_dnov_431, retro_dnov_95,
Equus caballus ENSECAG00000011465 ortholog_one2one 1 retrogene
retro_ecab_936,
Echinops telfairi ENSETEG00000016537 ortholog_one2many 1 retrogene
retro_etel_1857,
Gorilla gorilla ENSGGOG00000007518 possible_ortholog 2 retrogenes
retro_ggor_1182, retro_ggor_92,
Monodelphis domestica ENSMODG00000003559 ortholog_one2one 1 retrogene
retro_mdom_583,
Mus musculus ENSMUSG00000044792 ortholog_one2many 1 retrogene
retro_mmus_278,
Pongo abelii ENSPPYG00000019339 possible_ortholog 5 retrogenes
retro_pabe_1287, retro_pabe_2043, retro_pabe_2744, retro_pabe_2745, retro_pabe_367,
Pteropus vampyrus ENSPVAG00000004588 ortholog_one2one 1 retrogene
retro_pvam_956,
Rattus norvegicus ENSRNOG00000018343 ortholog_one2one 4 retrogenes
retro_rnor_1177, retro_rnor_1805, retro_rnor_2254, retro_rnor_2956,
Tarsius syrichta ENSTSYG00000012826 possible_ortholog 2 retrogenes
retro_tsyr_1060, retro_tsyr_1698,
Tursiops truncatus ENSTTRG00000004231 ortholog_one2one 1 retrogene
retro_ttru_1317,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_558 89.63 79.41
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Download FASTA sequences of all ENSSSCG00000010953 retrocopies