Parental gene:

NSMCE4A, ENSCAFG00000012419

Aliases:None
Description:non-SMC element 4 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:25935]
Organism:Dog (Canis familiaris)
Coordinates:28:31711770..31723103(-)


>ENSCAFG00000012419
GAAAACCGGGAGGATATACTGAATGCCAGCGACAAATTAACAGAGGTCCTTGAAGAGGCCAACACTCTGTTTAATGGAGT
GTCCCGAGCAAGAGAAGCAGTCCTAGATGCCCAGTTTCTCGTTTTGGCTTCAGATTTGGGCAAAGAGAAAGCAAAGCAAC
TGCGTTCTGATCTGAACTCGTTTGATATGTTAAGATATGTTGAAACTCTACTGACACATATGGGTGTAAATCCACTAGAA
GCTGAAGAACTCATCCGTGATGAAGATAGTTCTGATTTTGAATTCATAGTCTATGACTCCTGGAAAATATCAGGCAAAAC
AGCAGAAAACACCTTTAATAAAACCCATACATTCCACTTTCTGTTGGGTTCAATACAAGGAGAGTTCCCTGTGCCAAAGC
CACGAAGTGAACGTCCAAGAAAAGGTCCCACGACAGAAGAGAAGAAGACAATGCCTGACCAGTTAAGTGAAATGGAAGAA
TCCCATCAAGAAGCGACAGAGAAAGAAGTGGAAAGAATTCTGGGATTGTTGCAGACGTATTTCCGAGAAGATCCTGATAC
TCCTATGTCGTTCTTTGATTTTGTGGTTGATCCACATTCTTTCCCCCGAACAGTGGAAAACATCTTTCATGTTTCCTTCA
TTATAAGGGATGGTTTTGCAAGAATAAAGCTTGACCAAGACCGACTGCCAATAATAGAAACAGAACCTGTTAATATTAAT
GAAGAAAGTGAGGGAATTGACCAAAACACCCAAATTAGGAATCAAGGAATTATAGCTTTGAGCTACCGTGACTGGGAGGA
GATCGTGAAGACCTTCGAGATATCAGAGCCTGTGATTGCTTCAGGCCAG

Library Parental gene expression (RPM)
SRP017611_brain 5 .80 RPM
SRP017611_kidney 7 .92 RPM
SRP017611_liver 5 .15 RPM
SRP012049_cerebellum 9 .53 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010897 ortholog_one2one 1 retrogene
retro_amel_419,
Bos taurus ENSBTAG00000019166 ortholog_one2one 1 retrogene
retro_btau_1387,
Choloepus hoffmanni ENSCHOG00000003695 ortholog_one2one 1 retrogene
retro_chof_577,
Dipodomys ordii ENSDORG00000003880 ortholog_one2one 1 retrogene
retro_dord_677,
Equus caballus ENSECAG00000016651 ortholog_one2one 2 retrogenes
retro_ecab_109, retro_ecab_465,
Erinaceus europaeus ENSEEUG00000014906 ortholog_one2one 1 retrogene
retro_eeur_124,
Felis catus ENSFCAG00000003647 ortholog_one2one 1 retrogene
retro_fcat_994,
Homo sapiens ENSG00000107672 ortholog_one2one 1 retrogene
retro_hsap_43,
Loxodonta africana ENSLAFG00000004214 ortholog_one2one 1 retrogene
retro_lafr_1051,
Macaca mulatta ENSMMUG00000012044 ortholog_one2one 1 retrogene
retro_mmul_716,
Mustela putorius furo ENSMPUG00000002960 ortholog_one2one 1 retrogene
retro_mputfur_396,
Nomascus leucogenys ENSNLEG00000016919 ortholog_one2one 1 retrogene
retro_nleu_2073,
Otolemur garnettii ENSOGAG00000010026 ortholog_one2one 1 retrogene
retro_ogar_280,
Pongo abelii ENSPPYG00000002712 ortholog_one2one 1 retrogene
retro_pabe_878,
Pteropus vampyrus ENSPVAG00000017186 ortholog_one2one 2 retrogenes
retro_pvam_1163, retro_pvam_795,
Rattus norvegicus ENSRNOG00000020452 ortholog_one2one 1 retrogene
retro_rnor_2515,
Ictidomys tridecemlineatus ENSSTOG00000011112 ortholog_one2one 1 retrogene
retro_itri_36,
Vicugna pacos ENSVPAG00000006534 ortholog_one2one 1 retrogene
retro_vpac_260,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_379 56.89 99.29
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2. retro_cfam_1427 94.74 100.00
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Download FASTA sequences of all ENSCAFG00000012419 retrocopies