Parental gene:

NSMCE4A, ENSBTAG00000019166

Aliases:None
Description:Non-structural maintenance of chromosomes element 4 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q2TBI1]
Organism:Cow (Bos taurus)
Coordinates:26:42214938..42228682(-)


>ENSBTAG00000019166
ATGTCCGGGGACAGCAGCGGCCGCCGGCCCGAGGGCCGGGGCCGGGGCCGCGACCCGCACCGGGATCGCACCCGCTCCCG
CTCCCGCTCGCGGTCCCCGCTGTCGCCCGGCTCCCGCCGCGGCGCCGCGCCCGAGCGCAGGGAGGCCCCAGAGCGCCCGG
GCTTGGAGGATACCGAACCGTCGGATTCCGGGGACGAGATGATAGACCCAGCGAGCTTGGAGGAGGAGACCGACCCCAGC
CTCTGCCGCCAGATCCGCCATCAGTACCGCGCGCTTATCAACTCGGTCCAACAAAACCGGGAGGATATATTGAATGCCAG
CGACAAGTTAACAGAGGTCCTTGAAGAGGCCAACACTCTCTTTAATGGAGTGTCCCGAGCAAGAGAAGCAGTTCTGGATG
CCCACTTTCTTGTTCTGGCTTCAGATTTGGGCAAAGAGAAGGCAAAGCAGCTGCGTTCTGACCTGAACTCGTTTGATATG
TTACGATACGTGGAAACTCTACTGACTCATATGGGTGTAAATCCACTAGAAGCTGAAGAACTCATCCGTGATGAAGACAG
TTCTGATTTGGAATTCATAGTCTATGACTCCTGGAAAATATCAGGCAAAACAGCAGAAAACACCTTTAATAAAACCCATA
CATTCCACTTTCTGTTGGGTTCAATACAAGGAGAGTGCCCTGTGCCAAAGCCACGAATTGAACGTCCAAGAAAAGTTCGT
ATGATAGAAGAGCAGCAGGCAATGCCTGCCCAGTTAAAAAGAATGGAAGAGTCTCATCAAGAAGCAACAGAAAAAGAAGT
GGAAAGAATCTTGGGATTGTTGCAAACATACTTTCAAGAAGATCCTGATACTCCGATGTCCTTCTTTGACTTTGTGGTTG
ATCCACATTCTTTCCCCCGGACAGTGGAAAACATCTTTCATGTTTCTTTTATTATAAGGGATGGTTTTGCAAGAATAAGA
CTTGACCGAGATCGACTGCCAGTAATAGAGCCTGTTAATATTAATGAAGAAAGTGGAGGAAACACTCAAATTAGGAATCA
AGCAATTATAGCTTTGAGTTATCGAGACTGGGAGGAGATTGTGAGGACCTTTGAGATCTCAGAGCCTGTGATTACTTCAA
GTCAGAGCCAGCAGAGGCTGAGTGCTTGA

Library Parental gene expression (RPM)
SRP017611_brain 9 .55 RPM
SRP017611_kidney 29 .04 RPM
SRP017611_liver 8 .53 RPM
ERP005899_muscle 18 .42 RPM
ERP005899_liver 33 .67 RPM
SRP030211_testis 11 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010897 ortholog_one2one 1 retrogene
retro_amel_419,
Canis familiaris ENSCAFG00000012419 ortholog_one2one 2 retrogenes
retro_cfam_1427, retro_cfam_379,
Choloepus hoffmanni ENSCHOG00000003695 ortholog_one2one 1 retrogene
retro_chof_577,
Dipodomys ordii ENSDORG00000003880 ortholog_one2one 1 retrogene
retro_dord_677,
Equus caballus ENSECAG00000016651 ortholog_one2one 2 retrogenes
retro_ecab_109, retro_ecab_465,
Erinaceus europaeus ENSEEUG00000014906 ortholog_one2one 1 retrogene
retro_eeur_124,
Felis catus ENSFCAG00000003647 ortholog_one2one 1 retrogene
retro_fcat_994,
Homo sapiens ENSG00000107672 ortholog_one2one 1 retrogene
retro_hsap_43,
Loxodonta africana ENSLAFG00000004214 ortholog_one2one 1 retrogene
retro_lafr_1051,
Macaca mulatta ENSMMUG00000012044 ortholog_one2one 1 retrogene
retro_mmul_716,
Mustela putorius furo ENSMPUG00000002960 ortholog_one2one 1 retrogene
retro_mputfur_396,
Nomascus leucogenys ENSNLEG00000016919 ortholog_one2one 1 retrogene
retro_nleu_2073,
Otolemur garnettii ENSOGAG00000010026 ortholog_one2one 1 retrogene
retro_ogar_280,
Pongo abelii ENSPPYG00000002712 ortholog_one2one 1 retrogene
retro_pabe_878,
Pteropus vampyrus ENSPVAG00000017186 ortholog_one2one 2 retrogenes
retro_pvam_1163, retro_pvam_795,
Rattus norvegicus ENSRNOG00000020452 ortholog_one2one 1 retrogene
retro_rnor_2515,
Ictidomys tridecemlineatus ENSSTOG00000011112 ortholog_one2one 1 retrogene
retro_itri_36,
Vicugna pacos ENSVPAG00000006534 ortholog_one2one 1 retrogene
retro_vpac_260,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1387 56.01 81.41
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Download FASTA sequences of all ENSBTAG00000019166 retrocopies