Parental gene:

TCEB2, ENSBTAG00000019543

Aliases:None
Description:elongin B [Source:RefSeq peptide;Acc:NP_001029972]
Organism:Cow (Bos taurus)
Coordinates:25:2281944..2285931(+)


>ENSBTAG00000019543
ATGGACGTGTTCCTCATGATCCGGCGCCACAAGACCACCATTTTCACGGACGCCAAGGAGTCGAGCACCGTGTTCGAGCT
GAAGCGCATCGTCGAGGGTATCCTCAAGCGGCCGCCGGATGAGCAGCGGCTGTACAAGGACGACCAGCTTCTGGATGACG
GCAAGACGTTGGGCGAGTGTGGCTTCACCAGCCAGACAGCACGGCCTCAGGCCCCCGCCACTGTGGGGCTAGCCTTCAGG
GCAGATGAGGCATTCGAGGCCCTGCGCATCGAGCCTTTCTCTAGCCCACCTGAGCTGCCGGACGTGATGAAGCCACAGGA
CTCAGGAAGCAGCGCCAACGAACAGGCTGTGCAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 20 .92 RPM
SRP017611_kidney 28 .57 RPM
SRP017611_liver 22 .95 RPM
ERP005899_muscle 65 .04 RPM
ERP005899_liver 6 .56 RPM
SRP030211_testis 100 .28 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015347 ortholog_many2many 10 retrogenes
retro_cjac_1593, retro_cjac_1606, retro_cjac_2051, retro_cjac_2613, retro_cjac_2987, retro_cjac_3030, retro_cjac_342, retro_cjac_3819, retro_cjac_639, retro_cjac_959,
Cavia porcellus ENSCPOG00000021024 ortholog_one2many 1 retrogene
retro_cpor_1416,
Felis catus ENSFCAG00000004711 ortholog_many2many 2 retrogenes
retro_fcat_112, retro_fcat_40,
Homo sapiens ENSG00000103363 ortholog_one2many 2 retrogenes
retro_hsap_1246, retro_hsap_940,
Gorilla gorilla ENSGGOG00000015306 ortholog_many2many 1 retrogene
retro_ggor_976,
Monodelphis domestica ENSMODG00000016536 ortholog_many2many 4 retrogenes
retro_mdom_1149, retro_mdom_1617, retro_mdom_1964, retro_mdom_23,
Mustela putorius furo ENSMPUG00000015265 possible_ortholog 1 retrogene
retro_mputfur_469,
Mus musculus ENSMUSG00000055839 ortholog_one2many 7 retrogenes
retro_mmus_1212, retro_mmus_1489, retro_mmus_1664, retro_mmus_2930, retro_mmus_511, retro_mmus_747, retro_mmus_99,
Nomascus leucogenys ENSNLEG00000009471 ortholog_many2many 2 retrogenes
retro_nleu_295, retro_nleu_89,
Oryctolagus cuniculus ENSOCUG00000010116 ortholog_many2many 2 retrogenes
retro_ocun_202, retro_ocun_930,
Pongo abelii ENSPPYG00000007013 ortholog_many2many 1 retrogene
retro_pabe_74,
Pan troglodytes ENSPTRG00000007663 ortholog_many2many 1 retrogene
retro_ptro_857,
Rattus norvegicus ENSRNOG00000004814 ortholog_many2many 6 retrogenes
retro_rnor_1226, retro_rnor_1275, retro_rnor_185, retro_rnor_1948, retro_rnor_35, retro_rnor_352,
Sus scrofa ENSSSCG00000008061 ortholog_one2many 1 retrogene
retro_sscr_858,
Tursiops truncatus ENSTTRG00000015454 possible_ortholog 5 retrogenes
retro_ttru_1030, retro_ttru_109, retro_ttru_1276, retro_ttru_1909, retro_ttru_273,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_17 85.59 100.00
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2. retro_btau_29 99.15 100.00
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3. retro_btau_142 94.87 99.15
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Download FASTA sequences of all ENSBTAG00000019543 retrocopies